View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_194 (Length: 292)

Name: NF10829A_low_194
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_194
NF10829A_low_194
[»] chr7 (5 HSPs)
chr7 (17-292)||(22972764-22973039)
chr7 (162-292)||(22964520-22964650)
chr7 (52-121)||(32136853-32136924)
chr7 (91-202)||(23756591-23756703)
chr7 (191-227)||(26493898-26493934)
[»] chr8 (9 HSPs)
chr8 (17-292)||(12585618-12585893)
chr8 (47-289)||(26571608-26571855)
chr8 (74-165)||(2537183-2537274)
chr8 (75-209)||(42164003-42164137)
chr8 (84-255)||(36974212-36974380)
chr8 (54-209)||(40381604-40381759)
chr8 (64-123)||(26647930-26647989)
chr8 (134-209)||(14539500-14539575)
chr8 (91-163)||(37728440-37728512)
[»] chr6 (2 HSPs)
chr6 (17-292)||(6901453-6901734)
chr6 (54-209)||(6822537-6822692)
[»] chr3 (10 HSPs)
chr3 (17-292)||(49600653-49600930)
chr3 (70-175)||(44111228-44111332)
chr3 (54-209)||(1902120-1902275)
chr3 (54-209)||(1911566-1911721)
chr3 (54-186)||(52259697-52259829)
chr3 (54-123)||(54393337-54393406)
chr3 (83-161)||(34962266-34962345)
chr3 (84-175)||(10321267-10321360)
chr3 (75-161)||(7729824-7729909)
chr3 (191-227)||(53710353-53710389)
[»] chr2 (9 HSPs)
chr2 (75-292)||(22318521-22318729)
chr2 (84-168)||(31781011-31781093)
chr2 (92-147)||(42071433-42071488)
chr2 (152-214)||(4075566-4075628)
chr2 (64-165)||(21490270-21490369)
chr2 (74-198)||(7813519-7813641)
chr2 (191-227)||(22464625-22464661)
chr2 (191-227)||(22483504-22483540)
chr2 (191-227)||(34526307-34526343)
[»] chr4 (12 HSPs)
chr4 (52-187)||(6495718-6495853)
chr4 (74-186)||(27907245-27907355)
chr4 (86-191)||(46732648-46732752)
chr4 (100-150)||(50977860-50977910)
chr4 (207-285)||(4923056-4923138)
chr4 (74-186)||(40286525-40286643)
chr4 (134-176)||(1112105-1112147)
chr4 (73-123)||(47552075-47552125)
chr4 (73-130)||(15844261-15844318)
chr4 (92-124)||(24368060-24368092)
chr4 (191-227)||(27364838-27364874)
chr4 (191-227)||(55464844-55464880)
[»] chr5 (8 HSPs)
chr5 (52-166)||(18108244-18108357)
chr5 (47-144)||(14811421-14811517)
chr5 (64-123)||(10710987-10711046)
chr5 (84-160)||(17832169-17832245)
chr5 (54-209)||(15726879-15727034)
chr5 (91-130)||(27343172-27343211)
chr5 (54-123)||(3294213-3294281)
chr5 (191-227)||(26540839-26540875)
[»] chr1 (3 HSPs)
chr1 (54-209)||(30294105-30294260)
chr1 (91-123)||(29095870-29095902)
chr1 (191-227)||(21973972-21974008)
[»] scaffold0168 (1 HSPs)
scaffold0168 (191-227)||(15769-15805)
[»] scaffold0019 (1 HSPs)
scaffold0019 (191-227)||(135038-135074)
[»] scaffold0012 (1 HSPs)
scaffold0012 (191-227)||(197060-197096)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 22973039 - 22972764
Alignment:
Q  17 atcaccacaccaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctca 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22973039 atcaccaaaccaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctca 22972940  T
Q  117 ataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctgaga 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972939 ataaaaatctctctctatatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctgaga 22972840  T
Q  217 aagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacac 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972839 aagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacac 22972764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 22964650 - 22964520
Alignment:
Q  162 cattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcagttgccacaggtagtatcaaagata 261  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22964650 cattgatcacccattccatttcgcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcagttgccacaggtagtatcaaagata 22964551  T
Q  262 actttaaaagcaaatataccaacggatacac 292  Q
    |||||||||||||||||||||||||||||||    
T  22964550 actttaaaagcaaatataccaacggatacac 22964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 32136853 - 32136924
Alignment:
Q  52 acaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttc--aatctcaataaa 121  Q
    |||||||| |||||||| || |||| ||||| || ||||||||| |||||||||||||  ||||||||||||    
T  32136853 acaattgttctctacgatttatcattttttgaaattatcgaatgtttttctcattttcaaaatctcaataaa 32136924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 23756703 - 23756591
Alignment:
Q  91 gaatgattttctcattttc-aatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaact 189  Q
    ||||||||||||||||||| ||| ||||||||||| | | | | |||||||  ||||| || |||| ||||||| | ||| |||| |  |||||||| ||    
T  23756703 gaatgattttctcattttcaaatatcaataaaaatatatttttctatataaacaactaaacgatcacttaaccagtaatctcccactaaatttcgcatct 23756604  T
Q  190 gagtcttgataat 202  Q
    || ||||||||||    
T  23756603 gattcttgataat 23756591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 26493898 - 26493934
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26493898 agtcttgataatcttcattgctgaaaaagctctttca 26493934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 12585618 - 12585893
Alignment:
Q  17 atcaccacaccaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctca 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12585618 atcaccaaaccaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctca 12585717  T
Q  117 ataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctgaga 216  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12585718 ataaaaatctctctctctatataagtaactagacaatcatttaaccattgatcacccattcaatttcgcaactgagtcttgataatcttcatagctgaga 12585817  T
Q  217 aagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacac 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12585818 aagctctttcagctgttgcagttgccacaggtagtatcaaagataactataaaagcaaatataccaacggatacac 12585893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 47 - 289
Target Start/End: Original strand, 26571608 - 26571855
Alignment:
Q  47 caattacaattgtcctctacgacttgtcatattttggaaa-tatcgaatgattttctcattttcaatctcaataaaaa--tctctctatatatataagta 143  Q
    |||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  26571608 caattacaattgtcctatacgacttgtcatttttttgaaaatatcgaatgattttctcattttcaatctcaataaaaacctctctctatatatataagta 26571707  T
Q  144 actagacaatcattt-aaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcag-ttgc 241  Q
    ||||||||||||||| |||||||||||| | || |||||| |||||| ||||||||||||||||||||| ||||||||||||||| |||||| || ||||    
T  26571708 actagacaatcatttaaaccattgatcatctatccgattttgcaactcagtcttgataatcttcatagccgagaaagctctttcaactgttgtagtttgc 26571807  T
Q  242 cacaggtagtatcaaagataactttaaaagcaaatataccaacggata 289  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  26571808 cacatgtagtatcaaagataactttaaaagcaaatataccaacagata 26571855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 2537183 - 2537274
Alignment:
Q  74 catattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccatt 165  Q
    |||||||| || | || ||||||||||||||||||||||  ||| |||||| ||||| | |||||||||||||| ||||| |||||||||||    
T  2537183 catattttagatacattgaatgattttctcattttcaataccaacaaaaatatctctctctatataagtaactaaacaataatttaaccatt 2537274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 42164137 - 42164003
Alignment:
Q  75 atattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcaccca 174  Q
    ||||| ||||||| | |||||||||||||||||| ||| ||||||||||| ||  | | ||||||| |||||| ||||||||||||||  | ||| | ||    
T  42164137 atattatggaaattttgaatgattttctcatttttaatatcaataaaaatatccttctctatataaataactaaacaatcatttaaccgattatctctca 42164038  T
Q  175 ttcgatttcgcaactgagtcttgataatcttcata 209  Q
    |||||||||  |  ||| |||||||||| ||||||    
T  42164037 ttcgatttcctatttgattcttgataatattcata 42164003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 36974212 - 36974380
Alignment:
Q  84 aaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcacccattcgatttc 183  Q
    |||||| ||||| ||| ||||||||| |||||| ||||||  ||||| ||||||||| ||||||  ||||||||||   | ||||| |  ||  ||||||    
T  36974212 aaatattgaatgttttactcattttctatctcactaaaaacatctctttatatataattaactaagcaatcattta---aatgatctcttatgtgatttc 36974308  T
Q  184 gcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcagttgccacaggtagtatca 255  Q
    |||||| | |||||| ||  |  | ||| |||||| ||||||||| |||||||||||||||| |||||||||    
T  36974309 gcaactcattcttgaaaacttataaagcagagaaaactctttcagttgttgcagttgccacatgtagtatca 36974380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 40381604 - 40381759
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    ||||||| ||||||| || | ||||| | ||||  | ||| |||||||||||||||||| ||||||||||| | | | | ||||||| |||||| |||||    
T  40381604 aattgtcttctacgattttttatattatagaaactttgaaagattttctcattttcaatatcaataaaaatatatttctctatataaataactaaacaat 40381703  T
Q  154 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
    |||||||||  | ||| | ||||||||||| ||   || |||||||||| ||||||    
T  40381704 catttaaccgatcatctctcattcgatttcacatgcgattcttgataatattcata 40381759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 26647989 - 26647930
Alignment:
Q  64 tacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaa 123  Q
    ||||| ||| ||||||||  |||||| |||| ||||||||||||||||||||||||||||    
T  26647989 tacgatttgccatattttaaaaatattgaataattttctcattttcaatctcaataaaaa 26647930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 14539575 - 14539500
Alignment:
Q  134 tatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
    ||||||| |||||| ||||||||||||||  | ||| |||| ||||||||||| |||| | |||||||| ||||||    
T  14539575 tatataaataactaaacaatcatttaaccggtcatctcccactcgatttcgcatctgatttttgataatattcata 14539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 37728512 - 37728440
Alignment:
Q  91 gaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaacca 163  Q
    |||| ||||||| ||||||||| ||||||||||| ||  | | ||||||| |||||| || ||||||||||||    
T  37728512 gaataattttctaattttcaatatcaataaaaatatcattctctatataaataactaaacgatcatttaacca 37728440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 6901734 - 6901453
Alignment:
Q  17 atcaccacaccaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctca 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901734 atcaccaaaccaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctca 6901635  T
Q  117 ataaaaatctctctat------atatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatag 210  Q
    |||||||||||||| |      |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  6901634 ataaaaatctctctctctctctatatataagtaactagacaatcatttaaccattgatcatccattcgatttcgcagctgagtcttgataatcttcatag 6901535  T
Q  211 ctgagaaagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacac 292  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901534 ctgagaaagctctttcagctgttgtagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacac 6901453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 6822537 - 6822692
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    ||||||||| ||| | || ||||||| ||||||  | |||||||||  ||||||||||| ||||||||||| ||| | | ||||||| |||||| |||||    
T  6822537 aattgtcctttacaatttttcatattatggaaactttgaatgatttgttcattttcaatatcaataaaaatttctttctttatataaataactaaacaat 6822636  T
Q  154 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
     ||||||||  | ||| | ||||||||||| || | || |||||||||| ||||||    
T  6822637 tatttaaccgatcatctctcattcgatttcacatccgattcttgataatattcata 6822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 49600653 - 49600930
Alignment:
Q  17 atcaccacaccaaaacccagctgccaacaacaattacaattgtcctcta--cgacttgtcatattttggaaatatcgaatgattttctcattttcaatct 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  49600653 atcaccaaaccaaaacccagctgccaacaacaattacaattgtcctctatgcgactattcatattttggaaatatcgaatgattttctcattttcaatct 49600752  T
Q  115 caataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctga 214  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49600753 caataaaaatctctctttctatataagtaactagacaatcatctaaccattaatcacccattcgatttcgcaactgagtcttgataatcttcatagctga 49600852  T
Q  215 gaaagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacac 292  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49600853 aaaagctctttcagctgttgcagttgccacaagtagtatcaaagataactttaaaagcaaatataccaacggatacac 49600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 44111228 - 44111332
Alignment:
Q  70 ttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatc 169  Q
    ||||||| |||| ||||||| |||| ||||| |||||||| |||||||||||||| || || | |||||||||||||| |||| || |||||||||||||    
T  44111228 ttgtcattttttagaaatattgaataattttttcattttcgatctcaataaaaatatcactctctatataagtaactaaacaa-caattaaccattgatc 44111326  T
Q  170 acccat 175  Q
     |||||    
T  44111327 tcccat 44111332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 1902275 - 1902120
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| | | ||||||| |||||| |||||    
T  1902275 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 1902176  T
Q  154 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
     ||||||||| | |||   |||| ||||||||| | || |||||||||| ||||||    
T  1902175 gatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcata 1902120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 1911721 - 1911566
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| | | ||||||| |||||| |||||    
T  1911721 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 1911622  T
Q  154 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
     ||||||||| | |||   |||| ||||||||| | || |||||||||| ||||||    
T  1911621 gatttaaccaatcatctttcatttgatttcgcatccgattcttgataatattcata 1911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 52259829 - 52259697
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    |||||||||||||||  | | ||||| | |||| || |||||||||||||||| ||||| |||||||||||  |||  |  ||||||  ||| | |||||    
T  52259829 aattgtcctctacgatgttttatattctagaaacattgaatgattttctcattctcaatatcaataaaaatacctccctccatataaacaaccaaacaat 52259730  T
Q  154 catttaaccattgatcacccattcgatttcgca 186  Q
    |||||||||| | ||| ||||||||||||||||    
T  52259729 catttaaccagtcatctcccattcgatttcgca 52259697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 54393406 - 54393337
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaa 123  Q
    ||||||||||||||| |  ||||||| ||||||  | |||||||||||||||||||||| ||||||||||    
T  54393406 aattgtcctctacgattattcatattatggaaactttgaatgattttctcattttcaatatcaataaaaa 54393337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 34962266 - 34962345
Alignment:
Q  83 gaaatatcgaatgattttctcattttcaatctcaataaaaa-tctctctatatatataagtaactagacaatcatttaac 161  Q
    ||||||| ||||||||||||| |||||||| |||||||||| | ||||  | ||||||| |||||| |||||||||||||    
T  34962266 gaaatattgaatgattttctcgttttcaatatcaataaaaagtatctcattctatataaataactaaacaatcatttaac 34962345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 10321360 - 10321267
Alignment:
Q  84 aaatatcgaatgattttctcattttcaatctcaataaaaa-tct-ctctatatatataagtaactagacaatcatttaaccattgatcacccat 175  Q
    ||||||| ||||||||||| ||||||||||||||||||||  || |||| | |||||  ||||||| | |||||||||| |||||||| |||||    
T  10321360 aaatatcaaatgattttctgattttcaatctcaataaaaacactcctctctctatatttgtaactaaataatcatttaatcattgatctcccat 10321267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 7729909 - 7729824
Alignment:
Q  75 atattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaac 161  Q
    ||||| ||||||| | ||||||||| |||||||||||| ||||||||||| | | | | ||||||| ||| || |||||||||||||    
T  7729909 atattatggaaattttgaatgattt-ctcattttcaatatcaataaaaatatatttctctatataaataattaaacaatcatttaac 7729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 53710389 - 53710353
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  53710389 agtcttgataatcttcattgctgaaaaagctctttca 53710353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 292
Target Start/End: Original strand, 22318521 - 22318729
Alignment:
Q  75 atattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcaccca 174  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||   |||||||||||||||| ||||||||    
T  22318521 atattttcgaaatatcgaatgattttcacattttcaatctcaataaaaacctctctctatatataagtaact---caatcatttaaccattcatcaccca 22318617  T
Q  175 ttcgatttcgcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaa 274  Q
    ||| |||| |||||| || | | |||||||| |||| |||||||||||||||||||      ||||||||| ||||||||||||||||||||||||||||    
T  22318618 ttcaattttgcaactcagacataataatctttatagatgagaaagctctttcagct------gttgccacatgtagtatcaaagataactttaaaagcaa 22318711  T
Q  275 atataccaacggatacac 292  Q
    ||||||||||||||||||    
T  22318712 atataccaacggatacac 22318729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 31781093 - 31781011
Alignment:
Q  84 aaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgat 168  Q
    ||||||||||| ||||||| ||||||||| | ||||||| | ||||| | | |||||||||||| ||||||||||||| ||||||    
T  31781093 aaatatcgaattattttcttattttcaattttaataaaact-tctctctctgtataagtaacta-acaatcatttaactattgat 31781011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 42071433 - 42071488
Alignment:
Q  92 aatgattttctcattttcaatctcaataaaaatctctctatatatataagtaacta 147  Q
    ||||||||||||||||||||| ||||||||||| | | ||| ||||||| ||||||    
T  42071433 aatgattttctcattttcaatatcaataaaaatatatttatctatataaataacta 42071488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 4075566 - 4075628
Alignment:
Q  152 atcatttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctga 214  Q
    |||||||||||||||||||||||||  ||| || || ||| |||| | |||||||||||||||    
T  4075566 atcatttaaccattgatcacccattttattacgtaaatgactcttcacaatcttcatagctga 4075628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 21490369 - 21490270
Alignment:
Q  64 tacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaacca 163  Q
    ||||| || ||||||| | |||| || |||||||||||||| ||||||| ||||||||||| |   | | ||| ||||||||  ||||||||||||||||    
T  21490369 tacgatttttcatattcttgaaacattgaatgattttctcaatttcaatatcaataaaaatatacatctctatctaagtaac--gacaatcatttaacca 21490272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 7813641 - 7813519
Alignment:
Q  74 catattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcaccc 173  Q
    |||||| | ||||||| |||||||||||||||||| |||  ||| ||| || ||||  | |||||||||||||| |||||  |||||||||| ||  |||    
T  7813641 catattctagaaatattgaatgattttctcattttaaataccaacaaatatatctc--tctatataagtaactaaacaattgtttaaccattcatttccc 7813544  T
Q  174 attcgatttcgcaactgagtcttga 198  Q
    |  ||||||| || |||| ||||||    
T  7813543 aaacgatttcacatctgattcttga 7813519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 22464661 - 22464625
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  22464661 agtcttgataatcttcattgctgaaaaagctctttca 22464625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 22483540 - 22483504
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  22483540 agtcttgataatcttcattgctgaaaaagctctttca 22483504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 34526343 - 34526307
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34526343 agtcttgataatcttcattgctgaaaaagctctttca 34526307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 6495853 - 6495718
Alignment:
Q  52 acaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaat--ctctctatatatataagtaactaga 149  Q
    |||||||| || ||||| ||||||||||||| ||||||   |||||||||||||||| | |||||||||||||  |||||| |||||||||||||||| |    
T  6495853 acaattgttctatacgatttgtcatattttgaaaatatt--atgattttctcatttttagtctcaataaaaatatctctctctatatataagtaactaaa 6495756  T
Q  150 caatcatttaaccattgatcacccattcgatttcgcaa 187  Q
    ||||||||||  ||||||| || ||| |||||||||||    
T  6495755 caatcatttagtcattgattactcatgcgatttcgcaa 6495718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 27907245 - 27907355
Alignment:
Q  74 catattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcaccc 173  Q
    ||||||||| |||||| |||||||||| |||||||||||  ||| |||||| ||||  | |||||||||||||| |||||  |||||||||| ||| ||     
T  27907245 catattttgaaaatattgaatgattttttcattttcaataccaacaaaaatatctc--tctatataagtaactaaacaattgtttaaccattcatctcct 27907342  T
Q  174 attcgatttcgca 186  Q
    || ||||||||||    
T  27907343 atgcgatttcgca 27907355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 46732648 - 46732752
Alignment:
Q  86 atatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaaccattgatcacccattcgatttcgc 185  Q
    |||| ||||| |||||||||||||||| ||||| ||||| ||||| | ||||||| ||| || ||||||| ||||||| | ||| |||||| ||||||||    
T  46732648 atattgaatgtttttctcattttcaatatcaat-aaaatatctctttctatataaataattaaacaatcaattaaccagtcatctcccatttgatttcgc 46732746  T
Q  186 aactga 191  Q
    | ||||    
T  46732747 atctga 46732752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 50977860 - 50977910
Alignment:
Q  100 tctcattttcaatctcaataaaaatctctctatatatataagtaactagac 150  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  50977860 tctcattttcaatctcaataaaaacatctctctatatataagtaattagac 50977910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 4923138 - 4923056
Alignment:
Q  207 atagctgagaaagctctttcagctgttgca----gttgccacaggtagtatcaaagataactttaaaagcaaatataccaacg 285  Q
    ||||| |||||| ||||||||| |||||||    |||| |||| |||||||||| ||||||| |||||| |||||||||||||    
T  4923138 atagcagagaaatctctttcagttgttgcatgcagttgtcacatgtagtatcaatgataactctaaaagtaaatataccaacg 4923056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 40286643 - 40286525
Alignment:
Q  74 catattttggaaatatcgaatgattttctcattttcaatctcaataaaaatct------ctctatatatataagtaactagacaatcatttaaccattga 167  Q
    |||||| || |||||| |||||||||| |||||||||||  ||| ||||||||      ||||||||||||||| ||||| |||||  |||||||||  |    
T  40286643 catattctgaaaatattgaatgattttttcattttcaataccaacaaaaatctctctctctctatatatataagcaactaaacaattgtttaaccatcca 40286544  T
Q  168 tcacccattcgatttcgca 186  Q
    || || || ||||||||||    
T  40286543 tctccaatgcgatttcgca 40286525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 1112105 - 1112147
Alignment:
Q  134 tatataagtaactagacaatcatttaaccattgatcacccatt 176  Q
    ||||||||| || |||||||||||||||||||||||| |||||    
T  1112105 tatataagttacaagacaatcatttaaccattgatcatccatt 1112147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 47552125 - 47552075
Alignment:
Q  73 tcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaa 123  Q
    ||||||| ||||||  | |||||||||||||||||||||| ||||||||||    
T  47552125 tcatattatggaaactttgaatgattttctcattttcaatatcaataaaaa 47552075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 15844261 - 15844318
Alignment:
Q  73 tcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctct 130  Q
    |||||||||| |||||| |||| ||||||||||||| ||| ||||| ||||| |||||    
T  15844261 tcatattttgaaaatattgaattattttctcattttaaatgtcaattaaaatatctct 15844318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 24368092 - 24368060
Alignment:
Q  92 aatgattttctcattttcaatctcaataaaaat 124  Q
    ||||||||||||||||||||| |||||||||||    
T  24368092 aatgattttctcattttcaatgtcaataaaaat 24368060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 27364874 - 27364838
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27364874 agtcttgataatcttcattgctgaaaaagctctttca 27364838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 55464844 - 55464880
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  55464844 agtcttgataatcttcattgctgaaaaagctctttca 55464880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 18108244 - 18108357
Alignment:
Q  52 acaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagaca 151  Q
    |||||||| ||||| || ||||||| ||||| |||| | | ||| |||||||||||||||||||||||||||  | ||| |||||||||||||||| |      
T  18108244 acaattgttctctatgaattgtcattttttgaaaattt-gcatgtttttctcattttcaatctcaataaaaacatttctctatatataagtaactaaaag 18108342  T
Q  152 atcatttaaccattg 166  Q
    | |||||||||||||    
T  18108343 agcatttaaccattg 18108357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 14811517 - 14811421
Alignment:
Q  47 caattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaa 144  Q
    |||||| |||| |||||||| ||||| ||| ||||| ||||||| ||||| ||| |||||||||||||||||||||| |||| | | |||||||||||    
T  14811517 caattataattatcctctacaacttg-cattttttgaaaatatctaatgactttttcattttcaatctcaataaaaacctctgtttttatataagtaa 14811421  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 10710987 - 10711046
Alignment:
Q  64 tacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaa 123  Q
    ||||| ||| ||||||||  |||||| |||| ||||||||||||||||||||||||||||    
T  10710987 tacgatttgccatattttaaaaatattgaataattttctcattttcaatctcaataaaaa 10711046  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 17832245 - 17832169
Alignment:
Q  84 aaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaatcatttaa 160  Q
    |||||| ||||| ||||||| |||||| | ||||||||||| || || |  ||||||||||||| ||||||||||||    
T  17832245 aaatattgaatggttttctcgttttcagtatcaataaaaatatcacttttaatataagtaactaaacaatcatttaa 17832169  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 15726879 - 15727034
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    ||||||||||||  | || ||||||| ||||||  | ||||| |||||| ||||| ||  ||||||||||| | | | | ||||||| |||||| |||||    
T  15726879 aattgtcctctataatttttcatattatggaaactttgaatggttttcttattttgaaaatcaataaaaatatatttctttatataaataactaaacaat 15726978  T
Q  154 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
    |||||||||  | ||| | ||||| |||| ||| | || |||||||||| ||||||    
T  15726979 catttaaccgatcatctctcattcaattttgcatcagattcttgataatattcata 15727034  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 27343211 - 27343172
Alignment:
Q  91 gaatgattttctcattttcaatctcaataaaaatctctct 130  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  27343211 gaatgattttctcattttcaatgtcaataaaaatatctct 27343172  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 3294281 - 3294213
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaa 123  Q
    |||||| |||||||| || |||||||||  |||||  ||||||| || ||||||||||||||||||||||    
T  3294281 aattgttctctacgatttatcatattttaaaaataatgaatgatatt-tcattttcaatctcaataaaaa 3294213  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 26540839 - 26540875
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26540839 agtcttgataatcttcattgctgaaaaagctctttca 26540875  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 30294105 - 30294260
Alignment:
Q  54 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatatataagtaactagacaat 153  Q
    ||||||| ||||| | || ||||||| ||||||  | ||||| |||||| ||||| ||  ||||||||||| ||| | | ||||||| |||||| |||||    
T  30294105 aattgtcttctacaatttttcatattatggaaactttgaatggttttcttattttgaaaatcaataaaaatatctttttttatataaataactaaacaat 30294204  T
Q  154 catttaaccattgatcacccattcgatttcgcaactgagtcttgataatcttcata 209  Q
    | |||||||  | ||| | |||||||||||||| | || |||||||||| ||||||    
T  30294205 cttttaaccgatcatctctcattcgatttcgcatcagattcttgataatattcata 30294260  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 29095902 - 29095870
Alignment:
Q  91 gaatgattttctcattttcaatctcaataaaaa 123  Q
    |||||||||||||||||||||||||||||||||    
T  29095902 gaatgattttctcattttcaatctcaataaaaa 29095870  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 21973972 - 21974008
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  21973972 agtcttgataatcttcattgctgaaaaagctctttca 21974008  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 15805 - 15769
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  15805 agtcttgataatcttcattgctgaaaaagctctttca 15769  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 135038 - 135074
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  135038 agtcttgataatcttcattgctgaaaaagctctttca 135074  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 197096 - 197060
Alignment:
Q  191 agtcttgataatcttcatagctgagaaagctctttca 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  197096 agtcttgataatcttcattgctgaaaaagctctttca 197060  T

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