View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_196 (Length: 291)
Name: NF10829A_low_196
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_196 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 33979871 - 33979657
Alignment:
| Q |
24 |
actacgtactgtacacagttaattaatatagcaaacagaggcaagaaaaagaccgagagaacaatgtttgagaagtgcagcaacgatatatctatctagt |
123 |
Q |
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| T |
33979871 |
actacgtactgtacacagttaattaatatagcaaacagaggcaagaaaaagaccgagagaacaatgtttgagaagtgcagcaacgatatatctatctagt |
33979772 |
T |
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| Q |
124 |
accagtagtatttgtaacaagaacaattggatcacacgtatgcctatcaatgtggggactcatccaacataattttgaacagtacaagtcatcactgctt |
223 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33979771 |
accagtagtatttgtaacaagaacatgtggatcacacgtatgcctatcaatgtggggactcatccaacataattttgaacagtacaagtcatcactgctt |
33979672 |
T |
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| Q |
224 |
gttgctgtttaaatc |
238 |
Q |
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||||||||||||||| |
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| T |
33979671 |
gttgctgtttaaatc |
33979657 |
T |
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