View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_20 (Length: 514)
Name: NF10829A_low_20
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 46 - 514
Target Start/End: Complemental strand, 27801935 - 27801473
Alignment:
| Q |
46 |
caatttcttttgcactttttacagctat---tattgatgcttctttggattttaagcggctagagccggaattcgcccttcttccggctaattcattggc |
142 |
Q |
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| T |
27801935 |
caatttcttttgcacttttaacagctagggatattgatgcttctttggattttaagcggctagagccagaattcgcccttcttccggctaattcattggc |
27801836 |
T |
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| Q |
143 |
attctgtcactagacccactatctcactgtatcacacagtttaacttcagatgcataaacaggaatggtaccagggtcagtaacggagctacccaaacat |
242 |
Q |
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| T |
27801835 |
atactgtcactagacccactatcacactgt----------ttaacttcagatgcaacaaaaggaatggtaccagggtcagtaacggagctacccaaacat |
27801746 |
T |
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| Q |
243 |
gtcattgacaccacattcagcattcatctttgaggttgaaccataggatattccaaggaatgaggagaagaaacttctcaccagctga-ggaacggcttc |
341 |
Q |
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| T |
27801745 |
gtcattgacaccacattcagcattcatctttgaggttgaaccataggatattccaaggaatgaggagaagaaacttctcaccagctgaaggaacggcttc |
27801646 |
T |
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| Q |
342 |
attgtcacgtctgaatatagtaccagtagcacatagggtaagttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaa |
441 |
Q |
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| T |
27801645 |
attgtcacgtctgaatatagtaccagtagcacatagggtaagttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaa |
27801546 |
T |
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| Q |
442 |
agtgattaaaaactatggagtgtaaaagcgtgtaatgcaacgttggtgtaaaattattttctattggaaaaaa |
514 |
Q |
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| T |
27801545 |
agtgattaaaaactatggagtgtaaaagcgtgtaatgcaacgttggtgtaaaattattttctattggaaaaaa |
27801473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 203 - 356
Target Start/End: Complemental strand, 27770951 - 27770799
Alignment:
| Q |
203 |
aggaatggtaccagggtcagtaacggagctacccaaacatgtcattgacaccacattcagcattcatctttgaggttgaaccataggatattccaaggaa |
302 |
Q |
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| T |
27770951 |
aggaaaggcaccaggggcagtaatggaactacccaa-caggccattcacactacattcagcagtcaactttgagtttgaaccagacaatactccaaggaa |
27770853 |
T |
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| Q |
303 |
tgaggagaagaaacttctcaccagctgaggaacggcttcattgtcacgtctgaa |
356 |
Q |
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| T |
27770852 |
tgatgtgaagcaacttctcaccagctgagcaacggattcattgttatgtctgaa |
27770799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 27771113 - 27771027
Alignment:
| Q |
77 |
tgatgcttctttggattttaagcggctagagccggaattcgcccttcttccggctaattcattggcat--tctgtcactagacccac |
161 |
Q |
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| T |
27771113 |
tgatgattcattggattttaaacggctagatccagaactcgcccttattccggccaattcattggaatactctgtcactagacccac |
27771027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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