View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_21 (Length: 512)
Name: NF10829A_low_21
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 43703074 - 43703564
Alignment:
| Q |
18 |
acatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtt |
117 |
Q |
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| T |
43703074 |
acatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtt |
43703173 |
T |
|
| Q |
118 |
taaacttggttttattcacattacttttatcaccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaattt |
217 |
Q |
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| T |
43703174 |
taaactttgttttattcacattacttttatcgccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaattt |
43703273 |
T |
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| Q |
218 |
agtttttgtgaatcaagcaaattctgttgggagaggcatacattgtgtttgatagtatctcgagggattagtctttcaattgcatgcagagaatactttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43703274 |
agtttttgtgaatcaagcaaattctgttgggagaggcctacattgtgtttgatagtatctcgagggattagtctttcaattgcatgcctggaatactttg |
43703373 |
T |
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| Q |
318 |
gttt---nnnnnnnnnnncaattttataaacttatgttcatctaaaaccacctttatcgaacacttgcccaaatgcacactctttttcgtattgataatg |
414 |
Q |
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| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43703374 |
ggtttaccaaaaaaaaaacaattttataaacttatgtttatctaaaaccacctttatcgaacacttgcccaaatgcacactttttttcgtattgataatg |
43703473 |
T |
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| Q |
415 |
aattacttttgttggttcaaccacctacattgaggaatcaaaatactagttgagtttgtcttgtgagattcttatcttgtgattggtccatc |
506 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703474 |
aattacttttgtt-gttcaaccatctacattgaggaatcaaaatactagttgagtttgtcttgtgagattcttatcttgtgattggtccatc |
43703564 |
T |
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