View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_217 (Length: 279)
Name: NF10829A_low_217
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_217 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 6916479 - 6916211
Alignment:
| Q |
7 |
caaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctcttgttgaggtcaccagc |
106 |
Q |
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| T |
6916479 |
caaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttctcttgttgaggtcaccagc |
6916380 |
T |
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| Q |
107 |
aacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatag |
206 |
Q |
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| T |
6916379 |
aacagctccctgaaattctgttggtactttcagttca----gcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatag |
6916284 |
T |
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| Q |
207 |
atagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcgga |
279 |
Q |
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| T |
6916283 |
atagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcgga |
6916211 |
T |
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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 15038055 - 15038140
Alignment:
| Q |
194 |
tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcgga |
279 |
Q |
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| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcgga |
15038140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
| Q |
89 |
cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa |
188 |
Q |
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| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa |
15037924 |
T |
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| Q |
189 |
cact |
192 |
Q |
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|||| |
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| T |
15037925 |
cact |
15037928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
27 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
89 |
Q |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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