View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_218 (Length: 278)

Name: NF10829A_low_218
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_218
NF10829A_low_218
[»] chr2 (2 HSPs)
chr2 (13-278)||(16308139-16308410)
chr2 (13-278)||(16298534-16298818)
[»] chr4 (1 HSPs)
chr4 (112-221)||(52957087-52957196)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 16308139 - 16308410
Alignment:
Q  13 aatatagttgaaattatacagcggcacacagctgcaaagtcaatgcaaaaagatcagaaattaaaacataataatatattatnnnnnnnctaagcaaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||    
T  16308139 aatatagttgaaattatacagcggcacacagctgcaaagtcaatgcaaaaagatcagaaattaaaacataataatagattataaaaaaactaagcaaatt 16308238  T
Q  113 acctatcagaaagtaaaacaaagtgctggttattaggatcttgcagcgcatttgccagcagtcgtcgctctgcttcaactatggacattttaccccacac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16308239 acctatcagaaagtaaaacaaagtgctggttattaggatcttggagcgcatttgccagcagtcgtcgctctgcttcaactatggacattttaccccacac 16308338  T
Q  213 cagctgcaacagtgcatctaattagtctcact------gtttctacttagaaagcaatcaataacttacact 278  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  16308339 cagctgcaacagtgcatctaattagtctcactctcaaagtttctacttagaaagcaatcaataacttacact 16308410  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 16298534 - 16298818
Alignment:
Q  13 aatatagttgaaattatacagcggcacacagctgcaaagtcaatgcaaaaagatcagaaattaaaacataat---aatatattatnnnnnnn-------- 101  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||    |||| |||||                   
T  16298534 aatatagtcgaaattatatagcggcacacagctgcaaagccaatgcaaaaagatcagaaataaaaaaataagttaaataaattatataaaaagaaaaaaa 16298633  T
Q  102 ---ctaagcaaattacctatcagaaagtaaaacaaagtgctggttattaggatcttgcagcgcatttgccagcagtcgtcgctctgcttcaactatggac 198  Q
       |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||    
T  16298634 aaactaagcaaattacctatcagaaagtaaaacgaagtgctggttattaggatcttgtagtgcatttgccagcagtcgtcgttctgcttcaaccatggac 16298733  T
Q  199 attttaccccacaccagctgcaacagtgcatctaattagtctcact------gtttctacttagaaagcaatcaataacttacact 278  Q
    ||||||||||| | || |||| ||| |||| |||||||||||||||      | ||||||| ||||| |||||| |||||||||||    
T  16298734 attttaccccatatcacctgc-acaatgcaactaattagtctcactctcaaagcttctactaagaaaacaatcactaacttacact 16298818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 52957196 - 52957087
Alignment:
Q  112 tacctatcagaaagtaaaacaaagtgctggttattaggatcttgcagcgcatttgccagcagtcgtcgctctgcttcaactatggacattttaccccaca 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||| || ||| | ||||  |  |||| |||||| ||||| || || |||||||||||||    
T  52957196 tacctatcagaaagtaaaacaaagtgctggttatcaggatcttgaagggcagtcgccaatatccgtctctctgcatcaaccatagaaattttaccccaca 52957097  T
Q  212 ccagctgcaa 221  Q
    ||| ||||||    
T  52957096 ccacctgcaa 52957087  T

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