View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_221 (Length: 277)

Name: NF10829A_low_221
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_221
NF10829A_low_221
[»] chr7 (1 HSPs)
chr7 (7-269)||(5689881-5690143)
[»] chr4 (1 HSPs)
chr4 (18-266)||(25914568-25914813)
[»] chr6 (2 HSPs)
chr6 (9-266)||(6792546-6792803)
chr6 (123-238)||(6800131-6800246)
[»] chr5 (1 HSPs)
chr5 (7-152)||(22227348-22227490)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 5690143 - 5689881
Alignment:
Q  7 ctgagaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgagga 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5690143 ctgaaaagaaaggtgatagatatgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgagga 5690044  T
Q  107 cacttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5690043 cacttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca 5689944  T
Q  207 ttttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5689943 ttttatttgagaggtattaaggatttgccacaagagcttcttggtaaacatgttgagccttct 5689881  T

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Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 25914813 - 25914568
Alignment:
Q  18 ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag 117  Q
    ||||| ||||||||||||||||||||||| ||  ||||||| ||||||||  |||| || |||||||| ||  ||||||||   |||||||| ||||||     
T  25914813 ggtgacagatatgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaa 25914717  T
Q  118 ctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgag 217  Q
    |||||||||||||| ||||||| |||||||||||||  || ||||||||| |  ||||||||||||||||||| ||||||||||| |||||||||||||     
T  25914716 ctgtgactggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaa 25914617  T
Q  218 aggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct 266  Q
     ||||||||||||||||||||||||||||||||||| |  |||||||||    
T  25914616 gggtattaaggatttgccacaagagcttcttggtaaaccagttgagcct 25914568  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 6792546 - 6792803
Alignment:
Q  9 gagaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggaca 108  Q
    ||||| ||||| || | |||||||||||| || |||||  |||||||||| ||||||||  |  | || |||||  | |||||||| |||   ||||| |    
T  6792546 gagaaaaaaggggacatatatgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggata 6792645  T
Q  109 cttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacatt 208  Q
    ||||| | ||||||||||||||  |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||||| || || |||||    
T  6792646 cttatttggctgtgactggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacatt 6792745  T
Q  209 ttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct 266  Q
    |||| | |  |||||||||||||||||||| ||| |||||| ||| | | ||||||||    
T  6792746 ttatcttaagggtattaaggatttgccacatgagtttcttgttaatcctattgagcct 6792803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
Q  123 actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta 222  Q
    ||||||||  |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | |  ||||    
T  6800131 actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta 6800230  T
Q  223 ttaaggatttgccaca 238  Q
    ||||||||||||||||    
T  6800231 ttaaggatttgccaca 6800246  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 22227348 - 22227490
Alignment:
Q  7 ctgagaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgagga 106  Q
    ||||||| || |||||||||||||||||||| ||||| ||| | |||||||| ||||||||  || |||| |||||||| ||| | || || |   | ||    
T  22227348 ctgagaaaaagggtgatagatatgaagcaatttacagcttctactttggagactatggtcatatatcagtacaaggaccttatctcacatacc---aaga 22227444  T
Q  107 cacttatctagctgtgactggtggttctggaatatttgaaggtgtt 152  Q
    ||| ||||| ||| | || |||||||||||||| ||||||||||||    
T  22227445 cacatatcttgctataacaggtggttctggaatctttgaaggtgtt 22227490  T

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