View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_222 (Length: 277)
Name: NF10829A_low_222
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_222 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 42137933 - 42138201
Alignment:
| Q |
10 |
cagaacctgtgaaaag-ggaaagttatagccaatcttgtttcatataataaataatgtggacacctaatgacaagtttcttgcaacaggatttgttagtt |
108 |
Q |
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| T |
42137933 |
cagaacctgtgaaaaatggaaagttatagccaatcttgtttcatataataaataacgtggacacctaatgacaagtttcttgcaacaggatttgttagtt |
42138032 |
T |
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| Q |
109 |
accgactggtttctggttacaagaagatcaagttcatcaatgagcaaaatacatggtcggtcagcctcttaaccagttttcttcccttctacaaacctct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42138033 |
accgactggtttctggttacaagaagatcaagttcatcaatgagcaaaatacatggtcggtcagcctcttcaccagttttcttcccttctacaaacctct |
42138132 |
T |
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| Q |
209 |
catttagcaaacggagagcatctttccatcaaaccctgtgtccatttaacgctgcatatatgacctaaa |
277 |
Q |
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||||||||||||||||||| |||||||||| ||||||||| |||||||| ||| ||||||||||||||| |
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| T |
42138133 |
catttagcaaacggagagcctctttccatccaaccctgtgaccatttaatgcttcatatatgacctaaa |
42138201 |
T |
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