View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_226 (Length: 275)
Name: NF10829A_low_226
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_226 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 24244979 - 24245241
Alignment:
| Q |
1 |
acgagaaggcgcctatctcagatgcaagatcaatagaggaaactggaatacctatgacaacattgtcattatcctcgcgcaaaaattctgtttgtcgttt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
24244979 |
acgagaaagcgcctatctcagatgcaagatcaatagaggaaactggaatacctatgacaacattgtcactttcctcgcgcaaaaattctgtttgtcgttt |
24245078 |
T |
|
| Q |
101 |
ttcttcgaaggaaaagagtgttggagcgtcgaatgagtccgcgaagaaactttctttactaatagttttctatgctattgttatgattgttgaatttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245079 |
ttcttcgaaggaaaagagtgttggagcgtcgaatgagtccgcgaagaaactttctttactaatagttttctatgctattgttatgattgttgaatttgtt |
24245178 |
T |
|
| Q |
201 |
gggggtttgaaagctcacagcttatctgttatcagtgatgctgcacatttgctttctgatatt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24245179 |
gggggtttgaaagctcacagcttatctgttattagtgatgctgcacatttgctttctgatatt |
24245241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University