View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_23 (Length: 504)

Name: NF10829A_low_23
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_23
NF10829A_low_23
[»] chr6 (8 HSPs)
chr6 (227-480)||(26672248-26672497)
chr6 (227-480)||(26674776-26675025)
chr6 (13-232)||(8753598-8753817)
chr6 (43-232)||(7093128-7093317)
chr6 (80-225)||(12912996-12913141)
chr6 (20-161)||(30975504-30975645)
chr6 (20-161)||(30981943-30982084)
chr6 (20-161)||(30988107-30988248)
[»] chr2 (4 HSPs)
chr2 (227-480)||(1301590-1301835)
chr2 (329-480)||(1291144-1291291)
chr2 (260-298)||(1291110-1291148)
chr2 (37-223)||(37647186-37647372)
[»] chr7 (14 HSPs)
chr7 (13-213)||(19293942-19294143)
chr7 (16-191)||(5900411-5900586)
chr7 (43-232)||(19323426-19323615)
chr7 (43-232)||(5554965-5555154)
chr7 (31-232)||(15668896-15669098)
chr7 (43-232)||(29126562-29126751)
chr7 (31-232)||(18300142-18300343)
chr7 (50-232)||(40858736-40858920)
chr7 (43-232)||(38141445-38141634)
chr7 (31-165)||(32574742-32574876)
chr7 (80-232)||(25289347-25289499)
chr7 (43-177)||(29626175-29626308)
chr7 (83-207)||(1031461-1031585)
chr7 (128-177)||(12621417-12621466)
[»] chr5 (3 HSPs)
chr5 (44-232)||(26369645-26369833)
chr5 (80-232)||(40974014-40974166)
chr5 (20-225)||(22581078-22581283)
[»] scaffold0432 (1 HSPs)
scaffold0432 (31-232)||(8305-8506)
[»] chr4 (12 HSPs)
chr4 (44-232)||(47591165-47591353)
chr4 (80-168)||(48640000-48640088)
chr4 (31-177)||(30598926-30599072)
chr4 (138-232)||(40346516-40346610)
chr4 (80-177)||(37871395-37871492)
chr4 (80-168)||(23108521-23108609)
chr4 (40-168)||(9897206-9897334)
chr4 (83-223)||(36652432-36652572)
chr4 (40-223)||(43498518-43498701)
chr4 (164-217)||(6355740-6355793)
chr4 (95-180)||(53585503-53585588)
chr4 (87-147)||(39060463-39060523)
[»] chr1 (7 HSPs)
chr1 (44-232)||(26676101-26676289)
chr1 (80-232)||(16968085-16968236)
chr1 (80-225)||(34548575-34548720)
chr1 (80-195)||(36534991-36535106)
chr1 (90-177)||(31912305-31912392)
chr1 (171-225)||(11468669-11468723)
chr1 (80-203)||(33727659-33727782)
[»] chr3 (4 HSPs)
chr3 (78-221)||(28432057-28432199)
chr3 (44-174)||(10437141-10437271)
chr3 (87-166)||(15029349-15029428)
chr3 (37-126)||(42671303-42671392)
[»] chr8 (4 HSPs)
chr8 (44-224)||(9932806-9932986)
chr8 (80-225)||(13090523-13090668)
chr8 (43-225)||(15728683-15728865)
chr8 (83-221)||(8445000-8445137)
[»] scaffold0300 (1 HSPs)
scaffold0300 (83-162)||(8859-8938)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 227 - 480
Target Start/End: Complemental strand, 26672497 - 26672248
Alignment:
Q  227 gaataccttgcttctagggatgcgactatcgaacatgggtagtcgaaatggccatgctcccatattcctttggtataccttgaaccggaaaggatacaga 326  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26672497 gaataccttgcttctagggatgcgactatcgatcatgggtagtcgaaatggccatgctcccatattcctttggtataccttgaaccggaaaggatacaga 26672398  T
Q  327 ggctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagca 426  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26672397 ggctttcagaaagaagtgcagaaatgcttgcggaatgcatactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagca 26672298  T
Q  427 gcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtgg 480  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  26672297 gcacggttgtatttgagcgacca----catgatgaagaatttatacgcaagtgg 26672248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 227 - 480
Target Start/End: Complemental strand, 26675025 - 26674776
Alignment:
Q  227 gaataccttgcttctagggatgcgactatcgaacatgggtagtcgaaatggccatgctcccatattcctttggtataccttgaaccggaaaggatacaga 326  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26675025 gaataccttgcttctagggatgcgactatcgatcatgggtagtcgaaatggccatgctcccatattcctttggtataccttgaaccggaaaggatacaga 26674926  T
Q  327 ggctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagca 426  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26674925 ggctttcagaaagaagtgcagaaatgcttgcggaatgcatactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagca 26674826  T
Q  427 gcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtgg 480  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  26674825 gcacggttgtatttgagcgacca----catgatgaagaatttatacgcaagtgg 26674776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 8753598 - 8753817
Alignment:
Q  13 aatattattgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8753598 aatattattgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatga 8753697  T
Q  113 ggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcct 212  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  8753698 ggctgcaaaataatattagttaaaaaattacaacactcccgcaccttctcctcctcccaagctaataatcggcgcctccacttccaagcctcaccatcct 8753797  T
Q  213 ccccccacccaagtgaatac 232  Q
    ||||||||||||||||||||    
T  8753798 ccccccacccaagtgaatac 8753817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 7093317 - 7093128
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||||||| ||||||||||| |     ||||| |||||||||||||||||||||  || || |||||||| ||| |||||||||| ||||    
T  7093317 attataagcacttgtgacgttatatttgttggatgaatgtaaatgccaaatccacctgtcagaatgattagactgcaaaacaatattagttaaaatatca 7093218  T
Q  143 caacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    |||||||||||||||||| ||||||| |||||||| || || |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  7093217 caacactcccgcaccttcccctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatac 7093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 12912996 - 12913141
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    ||||||||||||||||||||||||| |  |  ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| |||||||| |    
T  12912996 tgtaagtgccaaatccacctgtcaggatgagaaggctgcaaaacaatattagataaaatatcacaacactcccgcaccttctcctcctcccaagctaaca 12913095  T
Q  180 atcggcgcctccacttcgaagcctcaccatcctccccccacccaag 225  Q
    | || |||| ||||| | ||||  |||| ||  |||||||||||||    
T  12913096 aacgacgccgccactgccaagctacaccctcaaccccccacccaag 12913141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 30975504 - 30975645
Alignment:
Q  20 ttgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgca 119  Q
    ||||||| || ||||| |||||||||||| | ||||||||||||||||||| | | | | |||||||| |||||  |||||||| ||  || || |||||    
T  30975504 ttgttgactgatgacaacaaatgattataagaacttgtgacattatatttgctggacgcatgtaagtgtcaaatttacctgtcaaaataattagactgca 30975603  T
Q  120 aaataatgttagttaaaaaatcacaacactcccgcaccttct 161  Q
    ||| ||| |||||||||| |||||||||||||||||| ||||    
T  30975604 aaacaatattagttaaaatatcacaacactcccgcactttct 30975645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 30981943 - 30982084
Alignment:
Q  20 ttgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgca 119  Q
    ||||||| || ||||| |||||||||||| | ||||||||||||||||||| | | | | |||||||| |||||  |||||||| ||  || || |||||    
T  30981943 ttgttgactgatgacaacaaatgattataagaacttgtgacattatatttgctggacgcatgtaagtgtcaaatttacctgtcaaaataattagactgca 30982042  T
Q  120 aaataatgttagttaaaaaatcacaacactcccgcaccttct 161  Q
    ||| ||| |||||||||| |||||||||||||||||| ||||    
T  30982043 aaacaatattagttaaaatatcacaacactcccgcactttct 30982084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 30988107 - 30988248
Alignment:
Q  20 ttgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgca 119  Q
    ||||||| || ||||| |||||||||||| | ||||||||||||||||||| | | | | |||||||| |||||  |||||||| ||  || || |||||    
T  30988107 ttgttgactgatgacaacaaatgattataagaacttgtgacattatatttgctggacgcatgtaagtgtcaaatttacctgtcaaaataattagactgca 30988206  T
Q  120 aaataatgttagttaaaaaatcacaacactcccgcaccttct 161  Q
    ||| ||| |||||||||| |||||||||||||||||| ||||    
T  30988207 aaacaatattagttaaaatatcacaacactcccgcactttct 30988248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 227 - 480
Target Start/End: Complemental strand, 1301835 - 1301590
Alignment:
Q  227 gaataccttgcttctagggatgcgactatcgaacatgggtagtcgaaatggccatgctcccatattcctttggtataccttgaaccggaaaggatacaga 326  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1301835 gaataccttgcttctagggatgcgactatc----atgggtagtcgaaatggccatgctcccatattcctttggtataccttgaaccggaaaggatacaga 1301740  T
Q  327 ggctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagca 426  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1301739 ggctttcagaaagaagtgcagaaatgcttgcggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagca 1301640  T
Q  427 gcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtgg 480  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  1301639 gcacggttgtatttgagcgacca----catgatgaagaatttatacgcaagtgg 1301590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 329 - 480
Target Start/End: Original strand, 1291144 - 1291291
Alignment:
Q  329 ctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagc 428  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1291144 ctttgagaaagaagtgcagaaatgcttgcggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagc 1291243  T
Q  429 acggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtgg 480  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||    
T  1291244 acggttgtatttgagcgacca----catgatgaagaatttatacgcaagtgg 1291291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 1291110 - 1291148
Alignment:
Q  260 catgggtagtcgaaatggccatgctcccatattcctttg 298  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1291110 catgggtagtcgaaatggccatgctcccatattcctttg 1291148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 37647372 - 37647186
Alignment:
Q  37 caaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaa 136  Q
    |||||||||||| |||||||| || |||||  |||| |   | || |||||||||||||||||||||  |  || ||||||||||| |||  ||| ||||    
T  37647372 caaatgattataagcacttgtaactttataactgttggaggcatgcaagtgccaaatccacctgtcaagatgattaggctgcaaaacaatactagataaa 37647273  T
Q  137 aaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccaccca 223  Q
    | ||| ||||| ||| |||| ||||| ||||| ||||| || || || |||| ||||| | |||| ||||| ||  |||||||||||    
T  37647272 atatcgcaacattcctgcactttctcttcctcccaagccaacaaacgtcgccgccactgccaagcttcaccctcaaccccccaccca 37647186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 19294143 - 19293942
Alignment:
Q  13 aatattattgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatga 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  19294143 aatattattgttgattgttgacatcaattgattataagcacttgtgacattatatctgtttgtcacatgtaagttccaaatccacctgtcagaaatatga 19294044  T
Q  113 ggctgcaaaataatgttagttaa-aaaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcc 211  Q
    |||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  19294043 ggctgcaaaacaatattagttaaaaaaatcacaacactcccacaccttctcctcctcccaagataataatcggcgcctccacttccaagcctcaccatcc 19293944  T
Q  212 tc 213  Q
    ||    
T  19293943 tc 19293942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 5900411 - 5900586
Alignment:
Q  16 attattgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggc 115  Q
    ||||||||||| | |||||| |||| |||||||  ||||||||| |||||||||||| ||||| ||||||||  ||||||||||||||||||||||| ||    
T  5900411 attattgttgactattgacaacaaaggattataaacacttgtgatattatatttgttagtcacatgtaagtgttaaatccacctgtcagaaatatgaagc 5900510  T
Q  116 tgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctcc 191  Q
    ||||||| ||| ||||||||||||| | || ||||| |||||||||||||||| ||||||||||||||||||||||    
T  5900511 tgcaaaacaatattagttaaaaaattataatactcctgcaccttctcctcctcccaagctaataatcggcgcctcc 5900586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 19323615 - 19323426
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||||||||||||||||||| |     ||||| |||||||||||||||||||||  || || |||||||||||| |||||||||| ||||    
T  19323615 attataagcacttgtgacattatatttgttggatgaatgtaaatgccaaatccacctgtcagaatgattagactgcaaaataatattagttaaaatatca 19323516  T
Q  143 caacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    |||||||||||||||||||||||||| |||||||| || || | || ||||||| |||| ||||| ||||||||||||||||||||||||    
T  19323515 caacactcccgcaccttctcctcctcccaagctaacaaccgacaccgccacttccaagcttcaccctcctccccccacccaagtgaatac 19323426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 5555154 - 5554965
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||||||| ||||||||||| |     ||||| |||||||||||||||||||||  || || |||| ||| ||| |||||||||| ||||    
T  5555154 attataagcacttgtgacgttatatttgttggatgaatgtaaatgccaaatccacctgtcagaatgattagactgctaaacaatattagttaaaatatca 5555055  T
Q  143 caacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    |||||||||||||||||||||||||| |||||||| || || |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  5555054 caacactcccgcaccttctcctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatac 5554965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 15669098 - 15668896
Alignment:
Q  31 tgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgtta 130  Q
    ||||| ||| || ||||| ||||||||||| ||||||||||| |   | ||||| |||||||||||||||||||||  || || |||||||| ||| |||    
T  15669098 tgacaacaagtggttataagcacttgtgacgttatatttgttggatgcatgtaaatgccaaatccacctgtcagaatgattagactgcaaaacaatatta 15668999  T
Q  131 gttaaaaaa-tcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaa 229  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| || || | || ||||||| |||| ||||| |||||||||||| ||||||||    
T  15668998 gttaaaaaaatcacaacactcccgcaccttctcctcctcccaagctaacaaccgacaccgccacttccaagcttcaccctcctccccccacacaagtgaa 15668899  T
Q  230 tac 232  Q
    |||    
T  15668898 tac 15668896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 29126562 - 29126751
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||||||| ||||||||||| |     ||||| |||||||||||||||||||||  || || |||||||| ||| |||||||||| ||||    
T  29126562 attataagcacttgtgacgttatatttgttggatgaatgtaaatgccaaatccacctgtcagaatgattagactgcaaaacaatattagttaaaatatca 29126661  T
Q  143 caacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    |||||||||||||||||||||||||| |||  ||| || || |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  29126662 caacactcccgcaccttctcctcctcccaatgtaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatac 29126751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 18300142 - 18300343
Alignment:
Q  31 tgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgtta 130  Q
    ||||| ||| || ||||| ||||||| ||| ||||||||||| |  || ||||| |||||||||||||||||||||  || || |||||||| |||  ||    
T  18300142 tgacaacaagtggttataagcacttgcgacgttatatttgttggatacatgtaaatgccaaatccacctgtcagaatgattagactgcaaaacaataata 18300241  T
Q  131 gttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaat 230  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||| || || |||| ||||||| || | | ||| ||||||||||||||||| ||||    
T  18300242 gttaagaaatcacaacactcccgcaccttttcctcctcccaagctaacaaccgacgccgccacttccaaactttaccctcctccccccacccaagcgaat 18300341  T
Q  231 ac 232  Q
    ||    
T  18300342 ac 18300343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 40858736 - 40858920
Alignment:
Q  50 gcacttgtgacattatat--ttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaaca 147  Q
    ||||||||||||||||||  ||||| |   | |||||||||||||||||||||||||||  || ||||||||||| ||| |||||||||| |||||||||    
T  40858736 gcacttgtgacattatatagttgttggaagcatgtaagtgccaaatccacctgtcagaatgattaggctgcaaaacaatattagttaaaatatcacaaca 40858835  T
Q  148 ctcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    ||||||||||||||||||||| ||||| || || || |||| ||||||| |||| || || || || ||||||||||| ||||||    
T  40858836 ctcccgcaccttctcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaagcgaatac 40858920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 38141634 - 38141445
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||| ||| ||||||||||| |     ||||| |||||||||||| ||||| ||  || || |||||||| ||| |||||||||| ||||    
T  38141634 attataagcacttgcgacgttatatttgttggatgaatgtaaatgccaaatccacttgtcaaaatgattagactgcaaaacaatattagttaaaatatca 38141535  T
Q  143 caacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    ||||||||| |||||||| ||||||| |||||||| || || |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  38141534 caacactcctgcaccttcccctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctccccccacccaagtgaatac 38141445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 32574876 - 32574742
Alignment:
Q  31 tgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgtta 130  Q
    ||||| ||| |||||||| ||||||||||||||||||||||| |   | ||||| |||||||||||||||||||||  || ||  ||||||| ||| |||    
T  32574876 tgacaacaagtgattataagcacttgtgacattatatttgttggatgcatgtaaatgccaaatccacctgtcagaataattagattgcaaaacaatatta 32574777  T
Q  131 gttaaaaaatcacaacactcccgcaccttctcctc 165  Q
    |||||||||| ||||||||||||||||||||||||    
T  32574776 gttaaaaaattacaacactcccgcaccttctcctc 32574742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 25289347 - 25289499
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    |||||||||||||||||| ||| ||||  || || |||||||| ||| |||||||||| || |||| |||||||||||||||||||||| ||||| || |    
T  25289347 tgtaagtgccaaatccacttgtaagaataatcagactgcaaaacaatattagttaaaatattacaatactcccgcaccttctcctcctcccaagcaaaca 25289446  T
Q  180 atcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    | || |||  ||||||| |||| || || || |||||||||||||| ||||||    
T  25289447 aacgacgctgccacttccaagcttccccctcttccccccacccaagcgaatac 25289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 29626308 - 29626175
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||||||| |||||||| || |     ||||| |||||||||||||||||||||  || || |||||  | ||| ||||||||| | |||    
T  29626308 attataagcacttgtgacgttatatttcttggatgaatgtaaatgccaaatccacctgtcagaatgattagactgcattacaatattagttaaata-tca 29626210  T
Q  143 caacactcccgcaccttctcctcctctcaagctaa 177  Q
    |||||||||||||||||| ||||||| ||||||||    
T  29626209 caacactcccgcaccttcccctcctcccaagctaa 29626175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 1031585 - 1031461
Alignment:
Q  83 aagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatc 182  Q
    ||||||||||||||||||||| |   |  ||||||||||| ||| |||| ||||| ||||||||| |||||||| ||||| ||||| ||||| || || |    
T  1031585 aagtgccaaatccacctgtcatagtgagtaggctgcaaaacaatattagataaaatatcacaacattcccgcactttctcttcctcccaagccaacaaac 1031486  T
Q  183 ggcgcctccacttcgaagcctcacc 207  Q
    | |||||||||| | |||| |||||    
T  1031485 gacgcctccactgccaagcttcacc 1031461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 12621417 - 12621466
Alignment:
Q  128 ttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaa 177  Q
    |||| ||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  12621417 ttagataaaatatcacaacactcccgcacctgctcctcctcccaaactaa 12621466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 26369645 - 26369833
Alignment:
Q  44 ttataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcac 143  Q
    ||||| ||||||||||||||||| ||||| |   | |||||||||||||||||||||||| ||  || ||||||||||| ||| |||||||||| |||||    
T  26369645 ttataagcacttgtgacattataattgttggaagcatgtaagtgccaaatccacctgtcataatgattaggctgcaaaacaatattagttaaaatatcac 26369744  T
Q  144 aacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    ||||||||||||||||||||||||| ||||| || || || |||| ||||||| |||| || || || || ||||||||||| ||||||    
T  26369745 aacactcccgcaccttctcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaagcgaatac 26369833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 40974014 - 40974166
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    ||||| || ||||||||||||||||||  || || |||||||| ||| |||||||| ||||||||| |||||||||||||||||||||| |||||||| |    
T  40974014 tgtaaatgtcaaatccacctgtcagaatgattagactgcaaaacaatattagttaagaaatcacaatactcccgcaccttctcctcctcccaagctaaca 40974113  T
Q  180 atcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    | || |||| ||||||| |||| ||||| ||||| ||||||||||||||||||    
T  40974114 accgacgccgccacttccaagcttcaccctcctctccccacccaagtgaatac 40974166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 22581078 - 22581283
Alignment:
Q  20 ttgttgattgttgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgca 119  Q
    |||||||| | || || |||||| ||||| |||||||||||||||||  || | |   | ||||||| |||||||||||||||| ||  || ||| ||||    
T  22581078 ttgttgatcgatgtcaacaaatggttataagcacttgtgacattataaatgatggaggcatgtaagtaccaaatccacctgtcataatgattaggttgca 22581177  T
Q  120 aaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctcccccca 219  Q
    ||| ||| |||||||||| |||||||||||||||||||||||||||||| || ||||| || || | || ||| ||| |||| ||||| || |||| |||    
T  22581178 aaacaatattagttaaaacatcacaacactcccgcaccttctcctcctcccacgctaacaaacgacaccgccatttccaagcttcaccctcttccctcca 22581277  T
Q  220 cccaag 225  Q
    ||||||    
T  22581278 cccaag 22581283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 8506 - 8305
Alignment:
Q  31 tgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgtta 130  Q
    ||||| ||| || ||||| ||||||||||  ||||||||||| |  || ||||| |||||||||||||||||||||  || || |||||||| ||| |||    
T  8506 tgacaacaagtggttataagcacttgtgaagttatatttgttggatacatgtaaatgccaaatccacctgtcagaatgattagactgcaaaacaatatta 8407  T
Q  131 gttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaat 230  Q
    ||||| ||||||||||||||||||| ||||||||| ||  ||||||| || ||  ||| ||||||| |||| ||||| ||||||||||||||||| ||||    
T  8406 gttaagaaatcacaacactcccgcaacttctcctcatcctaagctaacaaccgatgccgccacttccaagcttcaccctcctccccccacccaagcgaat 8307  T
Q  231 ac 232  Q
    ||    
T  8306 ac 8305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 47591165 - 47591353
Alignment:
Q  44 ttataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcac 143  Q
    ||||| ||||||||||| ||||| ||||| |   | |||||||| ||||||||||||||| ||  || ||||||||||| ||| |||||||||| |||||    
T  47591165 ttataagcacttgtgacgttataattgttggaagcatgtaagtgtcaaatccacctgtcataatgattaggctgcaaaacaatattagttaaaatatcac 47591264  T
Q  144 aacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    ||||||||||||||||||||||||| ||||| || || || |||| ||||||| |||| || || || || ||||||||||| ||||||    
T  47591265 aacactcccgcaccttctcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaagcgaatac 47591353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 48640088 - 48640000
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctc 168  Q
    ||||||||||||||||||||| |||||  || ||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  48640088 tgtaagtgccaaatccacctgccagaatgattagggtgcaaaacaatattagttaaaatatcacaacactcccgcaccttctcctcctc 48640000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 30598926 - 30599072
Alignment:
Q  31 tgacatcaaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgtta 130  Q
    ||||| ||| || ||||| ||||||||||| ||||||||||| |   | ||||| |||||||| ||  | ||||||  || || |||||||| ||| |||    
T  30598926 tgacaacaagtggttataagcacttgtgacgttatatttgttggatgcatgtaaatgccaaattcaagtatcagaatgattagactgcaaaacaatatta 30599025  T
Q  131 gttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaa 177  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  30599026 gttaaaaaatcacaacactcccgcaccttctcctcctccgaagctaa 30599072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 40346516 - 40346610
Alignment:
Q  138 aatcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    ||||||||||||||||||||||| ||||||| |||||||| || || |||| ||||||| |||| ||||| |||||| |||||||||||||||||    
T  40346516 aatcacaacactcccgcaccttcccctcctcccaagctaacaaccgacgccgccacttccaagcttcaccctcctcctcccacccaagtgaatac 40346610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 37871395 - 37871492
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaa 177  Q
    ||||||||||||||||||||||||| |  |  ||||||||||| ||| |||| ||||| ||||||||||||| |||||||||||| ||| ||||||||    
T  37871395 tgtaagtgccaaatccacctgtcaggatgagaaggctgcaaaacaatattagataaaatatcacaacactcctgcaccttctccttctcccaagctaa 37871492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 23108521 - 23108609
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctc 168  Q
    |||||| |||||||||||||||||| |  |  ||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||    
T  23108521 tgtaagagccaaatccacctgtcaggatgagtaggctgcaaaacaatattagataaaatatcacaacactcccgcaccttctcctcctc 23108609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 9897206 - 9897334
Alignment:
Q  40 atgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaa 139  Q
    ||||||||| ||||||||||  |||||  |||| |  || || |||||||||||||||||||||||| ||  ||||||||||| ||| |||| ||||| |    
T  9897206 atgattataagcacttgtgatgttataactgttggagacatgcaagtgccaaatccacctgtcagaattagtaggctgcaaaacaatattagataaaata 9897305  T
Q  140 tcacaacactcccgcaccttctcctcctc 168  Q
    |||||||| ||| |||| ||||| |||||    
T  9897306 tcacaacattccagcactttctcttcctc 9897334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 36652432 - 36652572
Alignment:
Q  83 aagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatc 182  Q
    |||||||||||||||||||||| |  || ||||||||||| ||| |||| ||||||||||||||| ||| |||| ||||| || || ||||| || || |    
T  36652432 aagtgccaaatccacctgtcaggatgattaggctgcaaaacaatattagataaaaaatcacaacattcctgcactttctcttcgtcccaagccaacaaac 36652531  T
Q  183 ggcgcctccacttcgaagcctcaccatcctccccccaccca 223  Q
    | |||| ||||| | |||| ||||| ||  |||||||||||    
T  36652532 gacgccgccactactaagcttcaccctcaaccccccaccca 36652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 43498701 - 43498518
Alignment:
Q  40 atgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaa 139  Q
    ||||||||| |||||||| ||||||||  |||| |   | || |||||||||||||||||||||  |  || ||||||||||| ||| |||| ||||| |    
T  43498701 atgattataagcacttgtaacattataactgttggaggcatgcaagtgccaaatccacctgtcaagatgattaggctgcaaaacaatattagataaaata 43498602  T
Q  140 tcacaacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccaccca 223  Q
    |||||||| ||| |||| ||||| ||||| ||||| || || || |||| ||||| | |||| ||||| ||  |||||||||||    
T  43498601 tcacaacattcctgcactttctcttcctcccaagccaacaaacgtcgccgccactgccaagcttcaccctcaaccccccaccca 43498518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 6355793 - 6355740
Alignment:
Q  164 tcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccc 217  Q
    ||||||||||||||||| |  |||| ||||||| |||| |||||||||||||||    
T  6355793 tcctctcaagctaataacctacgccgccacttccaagcttcaccatcctccccc 6355740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 53585503 - 53585588
Alignment:
Q  95 cacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataa 180  Q
    |||||||||||||||  || ||||| |||||| |||||||  |||||||  ||||| ||| ||| ||||||||| || ||||||||    
T  53585503 cacctgtcagaaatactagactgcagaataatattagttagcaaatcactgcactcacgcgcctgctcctcctcccatgctaataa 53585588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 39060463 - 39060523
Alignment:
Q  87 gccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaaca 147  Q
    ||||||||||||||||| || ||  ||||||||||| ||| |||| ||||| |||||||||    
T  39060463 gccaaatccacctgtcataattagtaggctgcaaaacaatattagataaaatatcacaaca 39060523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 44 - 232
Target Start/End: Complemental strand, 26676289 - 26676101
Alignment:
Q  44 ttataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcac 143  Q
    ||||| ||||||||||||||||| ||||| |   | |||||||||||||||||||||||| ||  || ||||||||||| ||| |||||||||| |||||    
T  26676289 ttataagcacttgtgacattatagttgttggaagcatgtaagtgccaaatccacctgtcataatgattaggctgcaaaacaatattagttaaaatatcac 26676190  T
Q  144 aacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    |||||||| |||||||||||||||| ||||| || || || |||| ||||||| || | || || || || ||||||||||| ||||||    
T  26676189 aacactccagcaccttctcctcctcccaagcaaacaaacgacgccgccacttccaaacttccccctcttctccccacccaagcgaatac 26676101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 16968085 - 16968236
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    ||||| ||||||| |||||||||||||| || ||||||||||| || ||||  |||||| || || ||||| || |||||||||||||| ||||||||||    
T  16968085 tgtaaatgccaaaaccacctgtcagaaagattaggctgcaaaacaacgttaaataaaaagtctcatcactcgcgtaccttctcctcctcccaagctaata 16968184  T
Q  180 atcggcgcctccacttcgaagcctcaccatcctccccccacccaagtgaatac 232  Q
    ||||||||||||| ||| |||   |||| |||| |||||||||||| ||||||    
T  16968185 atcggcgcctccaattccaagtgccaccttcct-cccccacccaagcgaatac 16968236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 34548720 - 34548575
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatg-aggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaat 178  Q
    |||||||||||||||||||||||||  || || ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||     
T  34548720 tgtaagtgccaaatccacctgtcag-gatgtgaaggctgcaaaacaatattagataaaatatcacaacactcccgcaccttctcctcctcccaagctaac 34548622  T
Q  179 aatcggcgcctccacttcgaagcctcaccatcctccccccacccaag 225  Q
    || || |||| ||||| | ||||  |||| ||  |||||||||||||    
T  34548621 aaacgacgccgccactgccaagctacaccctcaaccccccacccaag 34548575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 36534991 - 36535106
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    ||||| |||||||||||| ||||||||| | |||| ||||||  ||||||| |||||| ||| |||||||||| || || ||| ||||| ||||||||||    
T  36534991 tgtaaatgccaaatccacatgtcagaaacaagaggttgcaaatcaatgttaattaaaagatcgcaacactccctcatctgctcttcctcccaagctaata 36535090  T
Q  180 atcggcgcctccactt 195  Q
    ||   |||||||||||    
T  36535091 atatccgcctccactt 36535106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 31912305 - 31912392
Alignment:
Q  90 aaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaa 177  Q
    |||||||||| ||||||  || ||| ||||||| ||| |||| ||||| ||||||||| |||||||||||||||||||| || |||||    
T  31912305 aaatccacctatcagaatgattaggttgcaaaacaatattagataaaatatcacaacattcccgcaccttctcctcctcccatgctaa 31912392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 11468723 - 11468669
Alignment:
Q  171 aagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaag 225  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||| ||||||||    
T  11468723 aagctaataatcggcacctccactttcaagcatcaccatcctcccctcacccaag 11468669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 33727782 - 33727659
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    ||||| || ||||||||||| ||||||| |  ||| | ||||||| ||||| |||||| ||||| ||||||||   | | ||| ||||| ||||||||||    
T  33727782 tgtaaatgtcaaatccacctatcagaaacaaaaggtttcaaaatagtgttaattaaaagatcactacactcccttgcttgctcttcctcccaagctaata 33727683  T
Q  180 atcggcgcctccacttcgaagcct 203  Q
    |||  |||||||| ||||| ||||    
T  33727682 atcttcgcctccaattcgaggcct 33727659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 28432199 - 28432057
Alignment:
Q  78 cgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaa 177  Q
    ||||||| || ||||||||| |||  ||||||| ||||||||||| ||| ||||||||||| ||||| ||||||||||| |||||||||||  ||| |||    
T  28432199 cgtgtaaatgtcaaatccacatgtttgaaatattaggctgcaaaacaatattagttaaaaa-tcacagcactcccgcactttctcctcctcctaagttaa 28432101  T
Q  178 taatcggcgcctccacttcgaagcctcaccatcctccccccacc 221  Q
    ||| ||||||||||||||| |||||||| |||||||||||||||    
T  28432100 taaacggcgcctccacttccaagcctcatcatcctccccccacc 28432057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 10437141 - 10437271
Alignment:
Q  44 ttataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcac 143  Q
    ||||| ||||||||||||||||| ||||| |   | |||||||||||||||||| ||||| ||  || ||||||||||| ||| |||||||||| |||||    
T  10437141 ttataagcacttgtgacattataattgttggaagcatgtaagtgccaaatccacttgtcataatgattaggctgcaaaacaatattagttaaaatatcac 10437240  T
Q  144 aacactcccgcaccttctcctcctctcaagc 174  Q
    ||||||||||||||||||||||||| |||||    
T  10437241 aacactcccgcaccttctcctcctcccaagc 10437271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 15029428 - 15029349
Alignment:
Q  87 gccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcc 166  Q
    ||||||||||||||||||||   | ||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  15029428 gccaaatccacctgtcagaatggttaggttgcaaaacaatattagttaaaacatcacaacactcccgcaccttctcctcc 15029349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 42671303 - 42671392
Alignment:
Q  37 caaatgattataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataat 126  Q
    |||||||||||| ||| ||||||||||||| ||||| | ||| ||||| || ||||||||| | ||||||  || ||  |||||||||||    
T  42671303 caaatgattataagcatttgtgacattatagttgttggacacatgtaaatgtcaaatccacttttcagaatgattagaatgcaaaataat 42671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 9932806 - 9932986
Alignment:
Q  44 ttataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcac 143  Q
    ||||| ||||||||||||||||| ||||| |   | |||||||||||||||||||||||| ||  || | ||||||||| ||| |||||||||| |||||    
T  9932806 ttataagcacttgtgacattataattgttggaagcatgtaagtgccaaatccacctgtcataatgattaagctgcaaaacaatattagttaaaatatcac 9932905  T
Q  144 aacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaa 224  Q
    |||||||||||||||| |||||||| ||||| || || || |||| ||||||| |||| || || || || ||||||||||    
T  9932906 aacactcccgcaccttatcctcctcccaagcaaacaaacgacgccgccacttccaagcttccccctcttctccccacccaa 9932986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 13090523 - 13090668
Alignment:
Q  80 tgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaata 179  Q
    ||||||||||||||||||||||||| |  |  ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| |||||||| |    
T  13090523 tgtaagtgccaaatccacctgtcaggatgagaaggctgcaaaacaatattagataaaatatcacaacactcccgcaccttctcctcctcccaagctaaca 13090622  T
Q  180 atcggcgcctccacttcgaagcctcaccatcctccccccacccaag 225  Q
    | || |||| ||||| | ||||  |||| ||  |||||||||||||    
T  13090623 aacgacgccgccactgctaagctacaccctcaaccccccacccaag 13090668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 15728865 - 15728683
Alignment:
Q  43 attataggcacttgtgacattatatttgtttgtcacgtgtaagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatca 142  Q
    |||||| ||||||||||||||||| ||||| |   | || || |||||||||||| ||||||||| || |||||| | || ||||||| ||||||  |||    
T  15728865 attataagcacttgtgacattataattgttggaagcatgcaaatgccaaatccacttgtcagaaaaattaggctgtagaacaatgttaattaaaatctca 15728766  T
Q  143 caacactcccgcaccttctcctcctctcaagctaataatcggcgcctccacttcgaagcctcaccatcctccccccacccaag 225  Q
    ||||||||| | |||| ||||||||| |||||||||||||   | ||||||||| | |||| ||||||||||| |||| ||||    
T  15728765 caacactcctgaacctactcctcctcccaagctaataatctatgtctccacttccacgccttaccatcctccctccacacaag 15728683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 8445000 - 8445137
Alignment:
Q  83 aagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctcctcctctcaagctaataatc 182  Q
    |||||||||||||||||||||| |  || ||||||||||| ||| | || ||||||||||||||| ||| |||| ||||| ||||| ||||| || || |    
T  8445000 aagtgccaaatccacctgtcaggatgattaggctgcaaaacaatat-agataaaaaatcacaacattcctgcactttctcttcctcccaagccaacaaac 8445098  T
Q  183 ggcgcctccacttcgaagcctcaccatcctccccccacc 221  Q
    | |||| ||||| | |||| ||||| ||  |||||||||    
T  8445099 gccgccaccactaccaagcttcaccctcaaccccccacc 8445137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 8938 - 8859
Alignment:
Q  83 aagtgccaaatccacctgtcagaaatatgaggctgcaaaataatgttagttaaaaaatcacaacactcccgcaccttctc 162  Q
    |||||||||||||||||||||| |  || ||||||||||| ||| |||| ||||||||||||||| ||| |||| |||||    
T  8938 aagtgccaaatccacctgtcaggatgattaggctgcaaaacaatattagataaaaaatcacaacattcctgcactttctc 8859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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