View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_232 (Length: 272)
Name: NF10829A_low_232
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_232 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 11977523 - 11977767
Alignment:
| Q |
22 |
tcaccaccaaagccaactcttacagttatgtagttactaacaatagtgaaatccaaatccctacaagtgtgctacaacagtcagtggtatgtcttgaata |
121 |
Q |
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| T |
11977523 |
tcaccaccaaagccaactcttacagttatgtagttactaacaatagtgaaatgcaaatacctacaagtgtgctacaacagtcagtggtatgtcttgaata |
11977622 |
T |
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| Q |
122 |
gaagacctatcagtggccattccaagattgatagtataatttcactctctaagccaaggtgaatcactgacacagacaacggacactgacacgtcgacac |
221 |
Q |
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| T |
11977623 |
gaagacctatcagtggccattccaagattgataggataatttcactttctaagccaaggtgaatcactgacacagacaacggacactgacacgtcgacac |
11977722 |
T |
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| Q |
222 |
tgataataatttgacataatttcacaaatagtgagactccggcac |
266 |
Q |
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| T |
11977723 |
tgataataatttgacataatttcactaatagtgagactccggcac |
11977767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 41047857 - 41047892
Alignment:
| Q |
200 |
acggacactgacacgtcgacactgataataatttga |
235 |
Q |
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| T |
41047857 |
acggaaactgacacgtcgacactgataataatttga |
41047892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 10760917 - 10760882
Alignment:
| Q |
200 |
acggacactgacacgtcgacactgataataatttga |
235 |
Q |
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| T |
10760917 |
acggacactgacacgtcgacactgataataatttga |
10760882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 26733287 - 26733324
Alignment:
| Q |
200 |
acggacactgacacgtcgacactgataataatttgaca |
237 |
Q |
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| T |
26733287 |
acggacactgacacgtcgacaccgctaataatttgaca |
26733324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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