View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_238 (Length: 269)
Name: NF10829A_low_238
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_238 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 269
Target Start/End: Original strand, 3598144 - 3598409
Alignment:
| Q |
4 |
cagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcacatctcgaatcgagttaatgataattcagaggttgaaatcaacatatga |
103 |
Q |
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| T |
3598144 |
cagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatctcgaatcaagttaatgatacttcagaggttgaaatcaacatatga |
3598243 |
T |
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| Q |
104 |
tgaattttatataaaaacactatagttgacataaaagttttaagactaaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtgata |
203 |
Q |
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| T |
3598244 |
tgaattttatataaaaacactatagttgacataaaagttttaagactaaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtgata |
3598343 |
T |
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| Q |
204 |
atcatgattatccaaaaacttttgcattttcacggcatagtcatccgataatgtgcaatgaattct |
269 |
Q |
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| T |
3598344 |
atcatgattatccaaaaacttttacattttcacggcatagtcatccgataatgtgcaatgaattct |
3598409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 4356883 - 4356615
Alignment:
| Q |
4 |
cagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcac--atctcgaatcgagttaatgataattcagaggttgaaatcaacatat |
101 |
Q |
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| T |
4356883 |
cagacaaagtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatat |
4356784 |
T |
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| Q |
102 |
gatgaattttatataaaaacactatagttgacataaaagttttaagactaaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtga |
201 |
Q |
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| T |
4356783 |
gatgaatattatagaaaaacactatagttgacataaaaatttaaatactaaagattaaggaactttacctgaagttttgcagaacagtcacaggaagcga |
4356684 |
T |
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| Q |
202 |
t-aatcatgattatccaaaaacttttgcattttcacggcatagtcatccgataatgtgcaatgaattct |
269 |
Q |
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| T |
4356683 |
tgaatcatgattatcctaaaattgttgcattctcacggcatagtcatccgataatgtgcaatgaattct |
4356615 |
T |
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