View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_24 (Length: 503)
Name: NF10829A_low_24
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_24 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 37742315 - 37742648
Alignment:
| Q |
18 |
gacatcaaagtaatgctcctagctggtttcgctggtttagtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742315 |
gacatcaaagtaatgctcctagctggtttcgctggtttagtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgaca |
37742414 |
T |
|
| Q |
118 |
ttgagatagctcagataaaaagagaaagagaagctaataataataacaatgatgatgaaagtagtgaaagggagaaattgccaaatccatttcaagcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742415 |
ttgagatagctcagataaaaagagaaagagaagctaataataataacaatgatgatgaaagtagtgaaagggagaaattgccaaatccatttcaagcagc |
37742514 |
T |
|
| Q |
218 |
cctagcatcagcacttgcattttctattggtgcagtgatgccattgctagcagctgcatttataaagaatcacaaaaccagaatgggagttgttgctgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37742515 |
cctagcatcagcacttgcattttctattggtgcagtgatgccattgctagcagctgcatttataaagaatcacaaaaccagaatgggtgttgttgctgct |
37742614 |
T |
|
| Q |
318 |
gtggttagctttgcattgttggtgtttggaggag |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37742615 |
gtggttagctttgcattgttggtgtttggaggag |
37742648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 37749385 - 37749718
Alignment:
| Q |
18 |
gacatcaaagtaatgctcctagctggtttcgctggtttagtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749385 |
gacatcaaagtaatgctcctagctggtttcgctggtttagtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgaca |
37749484 |
T |
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| Q |
118 |
ttgagatagctcagataaaaagagaaagagaagctaataataataacaatgatgatgaaagtagtgaaagggagaaattgccaaatccatttcaagcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749485 |
ttgagatagctcagataaaaagagaaagagaagctaataataataacaatgatgatgaaagtagtgaaagggagaaattgccaaatccatttcaagcagc |
37749584 |
T |
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| Q |
218 |
cctagcatcagcacttgcattttctattggtgcagtgatgccattgctagcagctgcatttataaagaatcacaaaaccagaatgggagttgttgctgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37749585 |
cctagcatcagcacttgcattttctattggtgcagtgatgccattgctagcagctgcatttataaagaatcacaaaaccagaatgggtgttgttgctgct |
37749684 |
T |
|
| Q |
318 |
gtggttagctttgcattgttggtgtttggaggag |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37749685 |
gtggttagctttgcattgttggtgtttggaggag |
37749718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 37752403 - 37752070
Alignment:
| Q |
18 |
gacatcaaagtaatgctcctagctggtttcgctggtttagtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgaca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752403 |
gacatcaaagtaatgctcctagctggtttcgctggtttagtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgaca |
37752304 |
T |
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| Q |
118 |
ttgagatagctcagataaaaagagaaagagaagctaataataataacaatgatgatgaaagtagtgaaagggagaaattgccaaatccatttcaagcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752303 |
ttgagatagctcagataaaaagagaaagagaagctaataataataacaatgatgatgaaagtagtgaaagggagaaattgccaaatccatttcaagcagc |
37752204 |
T |
|
| Q |
218 |
cctagcatcagcacttgcattttctattggtgcagtgatgccattgctagcagctgcatttataaagaatcacaaaaccagaatgggagttgttgctgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37752203 |
cctagcatcagcacttgcattttctattggtgcagtgatgccattgctagcagctgcatttataaagaatcacaaaaccagaatgggtgttgttgctgct |
37752104 |
T |
|
| Q |
318 |
gtggttagctttgcattgttggtgtttggaggag |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37752103 |
gtggttagctttgcattgttggtgtttggaggag |
37752070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 349 - 484
Target Start/End: Complemental strand, 37741679 - 37741544
Alignment:
| Q |
349 |
gagggatataaacatgattatgaaaaatagacaggaccaaccgattcaatccaaagttgatcacggttaaatcattgaactttcaattaaagtatcatca |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37741679 |
gagggatataaacatgattatgaaaaatagacaggaccaaccgattcaatccaaagttgatcacggttaaatcattgaactttcaattaaagtatcatca |
37741580 |
T |
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| Q |
449 |
ccggtttgatgttatgtgatgaaatcttgttgttac |
484 |
Q |
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| T |
37741579 |
ctggtttgatgttatgtgatgaaatcttgtcgttac |
37741544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 44635631 - 44635546
Alignment:
| Q |
57 |
gtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagaga |
142 |
Q |
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||||| ||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| |||||||||| |
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| T |
44635631 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagaga |
44635546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 13548 - 13475
Alignment:
| Q |
48 |
gctggtttagtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
121 |
Q |
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|
|||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
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| T |
13548 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
13475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 19228 - 19155
Alignment:
| Q |
48 |
gctggtttagtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
121 |
Q |
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|||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
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| T |
19228 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
19155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 1293046 - 1293119
Alignment:
| Q |
48 |
gctggtttagtagccggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
121 |
Q |
| |
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|||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
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| T |
1293046 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
1293119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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