View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_240 (Length: 268)
Name: NF10829A_low_240
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_240 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 8074985 - 8074723
Alignment:
| Q |
1 |
accaattgagcacatggacatcaatggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
8074985 |
accaattgagcacatggacatcaatggaggacctcacaatctttgagactccattatgggatttaattttacaaaatccgactcattccaagttattcaa |
8074886 |
T |
|
| Q |
101 |
tgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8074885 |
tgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtgga |
8074786 |
T |
|
| Q |
201 |
accggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatattcttcgac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8074785 |
accggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatagtgttcgac |
8074723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 8066548 - 8066288
Alignment:
| Q |
3 |
caattgagcacatggacatcaatggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaatg |
102 |
Q |
| |
|
||||||| || ||||||||| | |||||| ||||||||||| || ||| ||||||||||||| || | ||||||| || || | | || ||||||||| |
|
|
| T |
8066548 |
caattgaccaaatggacatctaaggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagttattcaatg |
8066449 |
T |
|
| Q |
103 |
atgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtggaac |
202 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8066448 |
atgctatggagagtgactctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggaggtggaac |
8066349 |
T |
|
| Q |
203 |
cggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatattcttcgac |
263 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8066348 |
cggaaacacggttaaaattatttctgaggcgtttcctacgttaaaatgtatagtgttcgac |
8066288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 4177512 - 4177445
Alignment:
| Q |
186 |
gatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtat |
253 |
Q |
| |
|
|||||||| ||||||| |||| ||||| |||||||||||||||| | ||||||| ||| |||||||| |
|
|
| T |
4177512 |
gatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtat |
4177445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 34951456 - 34951317
Alignment:
| Q |
99 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
198 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| || |||| ||||| || || |||||||| || | ||| |||||||||||||| |||| |
|
|
| T |
34951456 |
aatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtg |
34951357 |
T |
|
| Q |
199 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
238 |
Q |
| |
|
|||| |||||||| | ||| |||||||||||||||||||| |
|
|
| T |
34951356 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 34946985 - 34946846
Alignment:
| Q |
99 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
198 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| || |||| ||||| || || |||||| | || | ||| |||||||||||||| |||| |
|
|
| T |
34946985 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtg |
34946886 |
T |
|
| Q |
199 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
238 |
Q |
| |
|
|||| |||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
34946885 |
gaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University