View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_242 (Length: 267)

Name: NF10829A_low_242
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_242
NF10829A_low_242
[»] chr6 (2 HSPs)
chr6 (8-244)||(27774933-27775170)
chr6 (8-122)||(12794455-12794570)
[»] chr5 (3 HSPs)
chr5 (11-123)||(31722012-31722124)
chr5 (10-124)||(31742504-31742619)
chr5 (11-112)||(24436169-24436270)
[»] chr8 (4 HSPs)
chr8 (13-124)||(5214933-5215044)
chr8 (8-124)||(35062798-35062914)
chr8 (8-121)||(30235745-30235859)
chr8 (8-123)||(10552607-10552722)
[»] chr7 (3 HSPs)
chr7 (8-124)||(38485904-38486020)
chr7 (34-124)||(9350077-9350167)
chr7 (67-124)||(48058298-48058355)
[»] chr1 (3 HSPs)
chr1 (8-117)||(2987756-2987865)
chr1 (8-124)||(4652126-4652242)
chr1 (37-124)||(11839584-11839672)
[»] chr2 (5 HSPs)
chr2 (8-124)||(31902038-31902154)
chr2 (7-124)||(6173843-6173961)
chr2 (9-57)||(4472282-4472331)
chr2 (8-117)||(9926546-9926653)
chr2 (14-66)||(18681423-18681475)
[»] chr4 (1 HSPs)
chr4 (14-124)||(19432382-19432493)
[»] chr3 (2 HSPs)
chr3 (19-124)||(1652502-1652608)
chr3 (26-120)||(34575019-34575113)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 27774933 - 27775170
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  27774933 ttggtgtttgtttttggatgttccatctatatacgacgccttagtttgtactttttgtatcaccggtctatgtttgtctcatgcaaagatctgattttta 27775032  T
Q  108 ataaaattttgctgattnnnnnnnn-ttgtactaaggcatttcaattaatatgttttgttctattttcaatgcgaacacatgatctcgataggaagtcgg 206  Q
    |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  27775033 ataaaattttgctgattaaaaaaaaattgtactaaggcatttcaattaatatgttttgttctattttcagtgcgaacacatggtctcgataggaagtcgg 27775132  T
Q  207 aaactaatatgttttatgttttagtgacttgattatta 244  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27775133 aaactaatatgttttatgttttagtgacttgattatta 27775170  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 12794455 - 12794570
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgcc-ttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttt 106  Q
    |||||||| |||||||||||||| ||||||||||| |||| ||||||||||| || |  | || |||||| | ||  ||| ||||| ||||||  |||||    
T  12794455 ttggtgttcgttttcggatgttccgtctatatacggcgcctttagtttgtaccttctaaaacatcggtctctgttcatcttatgcagagatcttattttt 12794554  T
Q  107 aataaaattttgctga 122  Q
    ||||||||||||||||    
T  12794555 aataaaattttgctga 12794570  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 31722012 - 31722124
Alignment:
Q  11 gtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaata 110  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||| || |||||| | || ||||  |||||||| ||| |||||||||    
T  31722012 gtgtttgttttcgggtgttccgtctatatacggcgccttagtttgtactttctgtaacatcggtctctgttcgtcttgtgcaaagacctgatttttaata 31722111  T
Q  111 aaattttgctgat 123  Q
    |||||||||||||    
T  31722112 aaattttgctgat 31722124  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 31742504 - 31742619
Alignment:
Q  10 ggtgtttgttttcggatgttctgtctatatacgacgcctta-gtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaa 108  Q
    ||||||||||||||| ||||| | ||||||||| ||||||  |||||||||| ||||| ||||||||| | || ||||  ||||  |||| |||||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgtacttcttgtaacaccggtctctgttcgtcttgtgcagggatcaggtttttaa 31742603  T
Q  109 taaaattttgctgatt 124  Q
    ||||||||||||||||    
T  31742604 taaaattttgctgatt 31742619  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 24436169 - 24436270
Alignment:
Q  11 gtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaata 110  Q
    |||||||||||||||||||| | ||||||| |||| |||||||||||||||   || ||||||||| |||| ||||  |||| ||| ||| |||||||||    
T  24436169 gtgtttgttttcggatgttccgactatatatgacgtcttagtttgtactttccataacaccggtctttattcgtcttgtgcagagacctgatttttaata 24436268  T
Q  111 aa 112  Q
    ||    
T  24436269 aa 24436270  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 5215044 - 5214933
Alignment:
Q  13 gtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaataaa 112  Q
    |||||||||||| ||||  | ||||||||| |||||||||||||||||| |||| || |||||| | || |||| |||||  |||||| |||||||||||    
T  5215044 gtttgttttcgggtgtttcgcctatatacggcgccttagtttgtactttctgtaacatcggtctctgttcgtcttatgcagggatctgatttttaataaa 5214945  T
Q  113 attttgctgatt 124  Q
    ||||||||||||    
T  5214944 attttgctgatt 5214933  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 35062798 - 35062914
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    ||||||||||||||||| ||||||||||||||||| ||  ||| |||||| ||| |||| ||| | ||| | |||||||  |||| ||| ||| ||||||    
T  35062798 ttggtgtttgttttcgggtgttctgtctatatacggcgtattaatttgtattttctgtaacactgttctctgtttgtcttgtgcagagacctgattttta 35062897  T
Q  108 ataaaattttgctgatt 124  Q
    |||||||||||||||||    
T  35062898 ataaaattttgctgatt 35062914  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 30235859 - 30235745
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgcc-ttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttt 106  Q
    ||||||||||||||||||||||| | |||||||||  ||| ||||||||||| || |||| ||||||||| | |||||||   ||| |||  ||||||||    
T  30235859 ttggtgtttgttttcggatgttccgcctatatacggagcctttagtttgtaccttctgtaacaccggtctttgtttgtcttgcgcagagacttggttttt 30235760  T
Q  107 aataaaattttgctg 121  Q
    ||||||| |||||||    
T  30235759 aataaaactttgctg 30235745  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 10552607 - 10552722
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    ||||||||||||||||||||||| | ||||||||| ||| |||||| ||||| ||| ||  |||  ||| | || ||||  |||| |||  |||||||||    
T  10552607 ttggtgtttgttttcggatgttccgcctatatacggcgctttagttggtactctttctaataccattctctgttcgtcttgtgcagagacatggttttta 10552706  T
Q  108 ataaaattttgctgat 123  Q
    ||||||||||| ||||    
T  10552707 ataaaattttgatgat 10552722  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 38485904 - 38486020
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    ||||||||||||||||| ||||| | |||| |||||||||||||||| |||||| |||| |||| |||| | || ||||   ||| ||| ||| ||||||    
T  38485904 ttggtgtttgttttcgggtgttccgcctatttacgacgccttagtttatactttctgtaacaccagtctctgttcgtcttgagcagagacctgattttta 38486003  T
Q  108 ataaaattttgctgatt 124  Q
    |||||||||||||||||    
T  38486004 ataaaattttgctgatt 38486020  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 9350077 - 9350167
Alignment:
Q  34 ctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaataaaattttgctgatt 124  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||| | || ||||  |||| ||| |||||||||||||||||||||||||||    
T  9350077 ctatatacggcgccttggtttgtactttttgtaacaccgatctctgttcgtcttgtgcagagacctggtttttaataaaattttgctgatt 9350167  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 48058355 - 48058298
Alignment:
Q  67 tcaccggtctatatttgtctcatgcaaagatctggtttttaataaaattttgctgatt 124  Q
    |||||||||| | |||||||   ||| |||| ||||||||||||||||||||||||||    
T  48058355 tcaccggtctctgtttgtcttgagcagagatatggtttttaataaaattttgctgatt 48058298  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 2987865 - 2987756
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||  |||  | |||| | |||||||||  || | ||| ||| ||||||    
T  2987865 ttggtgtttgttttcggatgttccgcctatatacggcgccttagtttgtactttcggtaatatcggtatctatttgtcttgtgtagagacctgattttta 2987766  T
Q  108 ataaaatttt 117  Q
    ||||||||||    
T  2987765 ataaaatttt 2987756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 4652126 - 4652242
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    ||||||||||||||| | ||||| | |||||||||  | ||||||||||||||| | || ||||||||| | || ||||  |||| | |  |||||||||    
T  4652126 ttggtgtttgttttcaggtgttccgcctatatacggtgtcttagtttgtactttctataacaccggtctctcttcgtcttgtgcagaaacttggttttta 4652225  T
Q  108 ataaaattttgctgatt 124  Q
    |||||||||||||||||    
T  4652226 ataaaattttgctgatt 4652242  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 11839584 - 11839672
Alignment:
Q  37 tatacgacgcctt-agtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaataaaattttgctgatt 124  Q
    ||||||||||||| |||||||||||| |||| ||| ||||| | || ||||  |||| ||| ||| |||||||||||||||||||||||    
T  11839584 tatacgacgcctttagtttgtactttctgtaacacaggtctttgttcgtcttgtgcagagacctgatttttaataaaattttgctgatt 11839672  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 31902154 - 31902038
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    |||||||| |||||||| ||||||  ||||||||| ||| ||  |||||||||| |||| ||||||||| | || ||||   ||| ||| || |||||||    
T  31902154 ttggtgttagttttcgggtgttctacctatatacggcgctttgatttgtactttctgtaacaccggtctctgttcgtcttgggcagagacctcgttttta 31902055  T
Q  108 ataaaattttgctgatt 124  Q
    |||||||||||||||||    
T  31902054 ataaaattttgctgatt 31902038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 6173961 - 6173843
Alignment:
Q  7 tttggtgtttgttttcggatgttctgtctatatacgacgcctt-agtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttt 105  Q
    ||||||||||||||| || |||||   |||||||||| | ||| ||||||||||||  ||| ||| |||||   || ||||  |||| ||||||| ||||    
T  6173961 tttggtgtttgtttttgggtgttccacctatatacgatgtctttagtttgtactttccgtaacactggtctcagttcgtcttgtgcagagatctgatttt 6173862  T
Q  106 taataaaattttgctgatt 124  Q
    |||||||||||||||||||    
T  6173861 taataaaattttgctgatt 6173843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 4472282 - 4472331
Alignment:
Q  9 tggtgtttgttttcggatgttctgtctatatacgacgcc-ttagtttgta 57  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  4472282 tggtgtttattttcggatgttccgtctatatacgacgcctttagtttgta 4472331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 9926546 - 9926653
Alignment:
Q  8 ttggtgtttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggttttta 107  Q
    ||||||||| ||||||  ||||| |||||||||||  |||||| ||||||||||||||| |||| |||| | || ||||  |||| ||| || |||||||    
T  9926546 ttggtgtttattttcgagtgttccgtctatatacggagcctta-tttgtactttttgtaacacc-gtctctgttcgtcttgtgcagagacctagttttta 9926643  T
Q  108 ataaaatttt 117  Q
    ||||||||||    
T  9926644 ataaaatttt 9926653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 18681423 - 18681475
Alignment:
Q  14 tttgttttcggatgttctgtctatatacgacgccttagtttgtactttttgta 66  Q
    ||||||||||| ||||| | ||||||||||| |||||||||||||||| ||||    
T  18681423 tttgttttcgggtgttccgcctatatacgacaccttagtttgtactttctgta 18681475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 19432382 - 19432493
Alignment:
Q  14 tttgttttcggatgttctgtctatatacgacgcctta-gtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaataaa 112  Q
    ||||||||||||||||| ||||||||||| ||||||  |||||||| || |||| ||| ||| | | |  ||||  |||||||| ||| |||||||||||    
T  19432382 tttgttttcggatgttccgtctatatacggcgccttttgtttgtaccttctgtaacactggtatctgtccgtcttgtgcaaagacctgttttttaataaa 19432481  T
Q  113 attttgctgatt 124  Q
    ||||||||||||    
T  19432482 attttgctgatt 19432493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 1652608 - 1652502
Alignment:
Q  19 tttcggatgttctgtctatatacgacgcctt-agtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaataaaatttt 117  Q
    |||||| ||||| | |||||||||||||||| |||||||||||| |||  || |||||| | |||||||  |||| ||| ||  ||||||||||||||||    
T  1652608 tttcgggtgttccgcctatatacgacgcctttagtttgtactttctgtgacatcggtctctgtttgtcttgtgcagagacctaatttttaataaaatttt 1652509  T
Q  118 gctgatt 124  Q
    |||||||    
T  1652508 gctgatt 1652502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 34575019 - 34575113
Alignment:
Q  26 tgttctgtctatatacgacgccttagtttgtactttttgtatcaccggtctatatttgtctcatgcaaagatctggtttttaataaaattttgct 120  Q
    ||||| |||||||||  || ||||||||||||||||||||| || || | | | ||||||| ||||||||| | | ||||||| |||||||||||    
T  34575019 tgttccgtctatatataacaccttagtttgtactttttgtaacagcgttttctgtttgtcttatgcaaagaccggatttttaacaaaattttgct 34575113  T

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