View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_245 (Length: 267)
Name: NF10829A_low_245
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_245 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 48993756 - 48993496
Alignment:
| Q |
1 |
aaaatagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993756 |
aaaatagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactc |
48993657 |
T |
|
| Q |
101 |
caattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993656 |
caattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacc |
48993557 |
T |
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| Q |
201 |
ccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993556 |
ccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
48993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 22623977 - 22624233
Alignment:
| Q |
4 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
103 |
Q |
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|||||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| |||| |
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| T |
22623977 |
atagcactaggtgatgtgtactgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaa |
22624076 |
T |
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| Q |
104 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
203 |
Q |
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| || | |||||| ||||||| ||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||||||| |
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| T |
22624077 |
taccaagaacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccc |
22624176 |
T |
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| Q |
204 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
260 |
Q |
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|| ||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
22624177 |
taatataagcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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