View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_248 (Length: 265)

Name: NF10829A_low_248
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_248
NF10829A_low_248
[»] chr7 (11 HSPs)
chr7 (12-265)||(1602686-1602941)
chr7 (143-265)||(1104294-1104419)
chr7 (143-265)||(1543009-1543131)
chr7 (86-256)||(1087023-1087193)
chr7 (128-265)||(1559070-1559207)
chr7 (89-163)||(1594525-1594599)
chr7 (143-265)||(1552318-1552440)
chr7 (116-265)||(2319586-2319732)
chr7 (66-111)||(1100123-1100167)
chr7 (226-265)||(2336056-2336095)
chr7 (221-265)||(3956977-3957021)
[»] scaffold0491 (2 HSPs)
scaffold0491 (88-265)||(7777-7954)
scaffold0491 (70-183)||(3232-3343)
[»] chr8 (4 HSPs)
chr8 (70-265)||(18751401-18751594)
chr8 (70-183)||(18741426-18741537)
chr8 (70-183)||(18746390-18746501)
chr8 (87-252)||(18755528-18755694)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 1602686 - 1602941
Alignment:
Q  12 atgaattggcgtgtgagaatgagaatgagagtgattgaagaggtcacagaatatcattataaaggttttcgatgggtcattcattagatctcaagaaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  1602686 atgaattggcgtgtgagaatgagaatgagagtgattgacgaggtcacagaatatcattataaaggttttcaatgg-tcattcattagatctcaagaaaaa 1602784  T
Q  112 gagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatct 211  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  1602785 gagtatgaacttgatcaaatatttagtttcaaatttctttggttcaaaaatatggatgctcttttttcttatttgggatttgattgtgggaattcaatct 1602884  T
Q  212 gctgctactgtgacatc---tcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    |||||||||||||||||   ||||||||||||||||| |||||||||||||||||||    
T  1602885 gctgctactgtgacatctcatcaacttcaaatggaagcaaatgctatattgaatagt 1602941  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 1104294 - 1104419
Alignment:
Q  143 aatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacatc---tcaacttcaaa 239  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||||||||||   |||||||||||    
T  1104294 aatttctttggttcaaacatgtggatgctcttttttcctatttgcggtttgattgttggaattgaatctgctgctactgtgacatctcatcaacttcaaa 1104393  T
Q  240 tggaagaaaatgctatattgaatagt 265  Q
    |||||| |||||||||||||||||||    
T  1104394 tggaagcaaatgctatattgaatagt 1104419  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 1543131 - 1543009
Alignment:
Q  143 aatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacatctcaacttcaaatgg 242  Q
    ||||||||||||||||| ||||||||||||||||||| || ||| | |||||| || |||| | ||||| || | |||||||||||||||||||||||||    
T  1543131 aatttctttggttcaaacatgtggatgctcttttttcctacttgcggtttgattgtcggaactcaatctactcccactgtgacatctcaacttcaaatgg 1543032  T
Q  243 aagaaaatgctatattgaatagt 265  Q
    ||| |||||||||||||||||||    
T  1543031 aagcaaatgctatattgaatagt 1543009  T

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Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 86 - 256
Target Start/End: Original strand, 1087023 - 1087193
Alignment:
Q  86 ggtcattcattagatctcaagaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttattt 185  Q
    ||||||||||||||||| ||| ||||   ||||||||  |  ||||||||| ||||||||||||||| | |||||||||||||   |||| || ||||||    
T  1087023 ggtcattcattagatctaaagcaaaaatttatgaactacacaaaatatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattattt 1087122  T
Q  186 gggatttgatcgtgggaattgaatctgctgctactgtgacatctcaacttcaaatggaagaaaatgctata 256  Q
    |   |||||| ||||||| | |||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  1087123 gcagtttgattgtgggaactcaatctgctgccactatgacatctcaacttcaaatggaagcaaatgctata 1087193  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 1559207 - 1559070
Alignment:
Q  128 aaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacat 227  Q
    |||||| |||||||||||||| ||||| ||||||||| |||   |||| || |||||||   |||||| ||||||| | |||| ||||| ||||||||||    
T  1559207 aaatatataatttcaaatttccttggtccaaaaatgttgattgcctttcttattatttgcagtttgattgtgggaactcaatccgctgccactgtgacat 1559108  T
Q  228 ctcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  1559107 ctcaacttcaaatggaagcaaatgctatatcgaatagt 1559070  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 1594525 - 1594599
Alignment:
Q  89 cattcattagatctcaagaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatg 163  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||||||||||||| ||||||| ||||||||    
T  1594525 cattcattagatctcaagaaaaaaaatatgaacttgagaaaatatttaatttcaaattcctttggtccaaaaatg 1594599  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 1552440 - 1552318
Alignment:
Q  143 aatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacatctcaacttcaaatgg 242  Q
    |||||||||||| |||||||||||||   |||| ||  |||||| | ||||||  | |||| | | ||| ||||||||||||||||||||||||||||||    
T  1552440 aatttctttggtccaaaaatgtggattgcctttcttactatttgcggtttgattatcggaactcagtcttctgctactgtgacatctcaacttcaaatgg 1552341  T
Q  243 aagaaaatgctatattgaatagt 265  Q
    ||| |||||| ||||| ||||||    
T  1552340 aagcaaatgcaatattaaatagt 1552318  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 2319586 - 2319732
Alignment:
Q  116 atgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctg 215  Q
    ||||||||||| ||||| ||| |||| ||||||| ||||   |||||||||||| ||||| |||||||||||  ||| || ||||| | | |||||||      
T  2319586 atgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttcttatttggcctttcattgtgggtactcaatctgc-- 2319683  T
Q  216 ctactgtgacatctcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    || | ||||||||||||| ||| ||||||| |||||| ||||| ||||||    
T  2319684 ct-cagtgacatctcaacctcatatggaagcaaatgcgatattaaatagt 2319732  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 1100123 - 1100167
Alignment:
Q  66 cattataaaggttttcgatgggtcattcattagatctcaagaaaaa 111  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  1100123 cattataaaggtttttgatgg-tcattcattagatctcaagaaaaa 1100167  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 2336056 - 2336095
Alignment:
Q  226 atctcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  2336056 atctcaacttcaaatggaagcaaatgctataatgaatagt 2336095  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 3957021 - 3956977
Alignment:
Q  221 gtgacatctcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    ||||||||||||||||||||||||| |||||| ||| | ||||||    
T  3957021 gtgacatctcaacttcaaatggaagcaaatgcaatactaaatagt 3956977  T

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Target: scaffold0491 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 7954 - 7777
Alignment:
Q  88 tcattcattagatctcaagaaaaag---agtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatt 184  Q
    |||||||||||||||||| |||||    | ||||| |||||  ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  7954 tcattcattagatctcaaaaaaaaatatattatgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatt 7855  T
Q  185 tgggatttgatcgtgggaattgaatctgctgctactgtgacatctcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    || | |||| | | ||||| | |||   |||| ||  |||||||||||||||||||||||| |||||||||||| ||||||    
T  7854 tgcggtttggttgagggaactcaat---ctgccacaatgacatctcaacttcaaatggaagcaaatgctatattaaatagt 7777  T

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Target: scaffold0491; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 3343 - 3232
Alignment:
Q  70 ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat 168  Q
    ||||||||||| ||||| |||||||| | |||||| |||||||   |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  3343 ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat 3247  T
Q  169 gctcttttttcttat 183  Q
    | ||||| |||||||    
T  3246 ggtctttcttcttat 3232  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 18751594 - 18751401
Alignment:
Q  70 ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat 168  Q
    ||||||||||| ||||| |||||||| | |||||| |||||||   |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  18751594 ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat 18751498  T
Q  169 gctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacatc---tcaacttcaaatggaagaaaatgctatattgaatagt 265  Q
    | ||||| |||||||||| | |||| | | ||||| | |||   |||| ||  |||||||   ||||||||||||||||| |||||||||||| ||||||    
T  18751497 ggtctttcttcttatttgcggtttggttgagggaactcaat---ctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagt 18751401  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 18741537 - 18741426
Alignment:
Q  70 ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat 168  Q
    ||||||||||| ||||| |||||||| | |||||| |||||||   |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  18741537 ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat 18741441  T
Q  169 gctcttttttcttat 183  Q
    | ||||| |||||||    
T  18741440 ggtctttcttcttat 18741426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 18746501 - 18746390
Alignment:
Q  70 ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat 168  Q
    ||||||||||| ||||| |||||||| | |||||| |||||||   |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  18746501 ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat 18746405  T
Q  169 gctcttttttcttat 183  Q
    | ||||| |||||||    
T  18746404 ggtctttcttcttat 18746390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 18755694 - 18755528
Alignment:
Q  87 gtcattcattagatctcaagaaa-aagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtgga-tgctcttttttcttatt 184  Q
    ||||||||||||||||| ||||| || |  | ||||||||  ||||||||| ||||||||||| ||||| |||| ||||||| ||| |||| ||||||||    
T  18755694 gtcattcattagatctcgagaaagaaaaaaaagaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgc-ctttcttcttatt 18755596  T
Q  185 tgggatttgatcgtgggaattgaatctgctgctactgtgacatctcaacttcaaatggaagaaaatgc 252  Q
    |||| | |||||| ||||| | |||||  ||||||  |||||| |||| |||||||||||| ||||||    
T  18755595 tggggtgtgatcgagggaactcaatcttttgctacaatgacatatcaatttcaaatggaagcaaatgc 18755528  T

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