View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_249 (Length: 263)
Name: NF10829A_low_249
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_249 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 25988697 - 25988481
Alignment:
| Q |
12 |
gacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaag |
111 |
Q |
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| T |
25988697 |
gacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaag |
25988598 |
T |
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| Q |
112 |
cacattggatgtccattatagaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988597 |
cacattggatgtccattatagaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaa |
25988498 |
T |
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| Q |
212 |
ctaagacaaacaaggat |
228 |
Q |
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||||||||||||||||| |
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| T |
25988497 |
ctaagacaaacaaggat |
25988481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 25320973 - 25320891
Alignment:
| Q |
131 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
213 |
Q |
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| T |
25320973 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
25320891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 26150666 - 26150584
Alignment:
| Q |
131 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
213 |
Q |
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| T |
26150666 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
26150584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 25321046 - 25320975
Alignment:
| Q |
12 |
gacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
83 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25321046 |
gacatcagacttagttgaagctcaagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
25320975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 26150739 - 26150668
Alignment:
| Q |
12 |
gacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
83 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26150739 |
gacatcagacttagttgaagctcaagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
26150668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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