View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_256 (Length: 259)
Name: NF10829A_low_256
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_256 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 12123760 - 12123989
Alignment:
| Q |
23 |
atataaacgaataagacgttttttctttg-----gtaagttcaaaaggatcaatcaaattggtaaatgaagagcttacnnnnnnnnnncattatctttct |
117 |
Q |
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| T |
12123760 |
atataaacgaataagatgttttttcttttctttagtaagttcaaaaggatcaatcaaattgataaatgaagagcttacttttttttttcattatctttct |
12123859 |
T |
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| Q |
118 |
nnnnnnnntaaactatttgtattctcaacctcttaactaaattttggtagtttaaaataactagtaaaaagaaagacttaagatattattttatggagag |
217 |
Q |
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| T |
12123860 |
aaaaaaaaataactatttctattctcaacctcttacctaaattttggtagtttaaaataactagtaaaacgaaagacttaagatattattttatggagag |
12123959 |
T |
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| Q |
218 |
gtctccatcctttttcttgtggtgaatatt |
247 |
Q |
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|||||||||||||||||||| | ||||||| |
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| T |
12123960 |
gtctccatcctttttcttgttgagaatatt |
12123989 |
T |
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