View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_259 (Length: 259)
Name: NF10829A_low_259
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_259 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 20232527 - 20232773
Alignment:
| Q |
5 |
caatgacaaacataaaatatattttgaattcaaacattgagcccttcatttatctctatctcacaagatgattaaaacatactctaaatgagctaggaat |
104 |
Q |
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| T |
20232527 |
caatgacaaacataaaatatattttgaattcaaacattgagcccttcatttatctctatctcacaagatgattaaaacatactctaaatgagctaggaat |
20232626 |
T |
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| Q |
105 |
caaagc---nnnnnnnntaatcatgaataataatcattcatgaaacctatgaaattccataaaatctcaaataatagatgatgttacaaataatatnnnn |
201 |
Q |
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| T |
20232627 |
caaagcaaaaaaaaaaataatcataaataataatcattcatgaaacctatgaaattccataaaatctcaaataatagatgatgttacaaataatat-aaa |
20232725 |
T |
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| Q |
202 |
nnntactgacttgcgaatcaatgcttgaaaataggacagctatattat |
249 |
Q |
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| T |
20232726 |
aaatactgacttacgaatcaatgcttgaaaataggacagctatattat |
20232773 |
T |
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