View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_272 (Length: 254)

Name: NF10829A_low_272
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_272
NF10829A_low_272
[»] chr2 (39 HSPs)
chr2 (1-178)||(12219891-12220069)
chr2 (1-180)||(3875382-3875562)
chr2 (1-182)||(37937050-37937229)
chr2 (1-180)||(22630936-22631117)
chr2 (1-181)||(17877201-17877383)
chr2 (1-182)||(40258969-40259149)
chr2 (1-182)||(16790587-16790767)
chr2 (1-182)||(1386254-1386432)
chr2 (87-182)||(23205351-23205447)
chr2 (87-182)||(23676955-23677051)
chr2 (177-238)||(12222089-12222150)
chr2 (1-115)||(9966263-9966379)
chr2 (1-182)||(16179222-16179420)
chr2 (1-118)||(27266884-27267003)
chr2 (1-56)||(8888731-8888786)
chr2 (1-56)||(9185379-9185434)
chr2 (1-56)||(9188607-9188662)
chr2 (1-56)||(37279631-37279686)
chr2 (1-56)||(11347850-11347905)
chr2 (1-56)||(24235191-24235246)
chr2 (1-56)||(24238463-24238518)
chr2 (1-47)||(13137036-13137082)
chr2 (1-47)||(15470553-15470599)
chr2 (1-47)||(25959652-25959698)
chr2 (1-47)||(31585904-31585950)
chr2 (1-47)||(40781567-40781613)
chr2 (1-47)||(43207854-43207900)
chr2 (1-47)||(43723795-43723841)
chr2 (1-49)||(22021163-22021211)
chr2 (1-56)||(29440590-29440645)
chr2 (1-48)||(31427504-31427551)
chr2 (1-48)||(33310762-33310809)
chr2 (1-48)||(38015614-38015661)
chr2 (1-48)||(45457257-45457304)
chr2 (1-31)||(13971874-13971904)
chr2 (1-47)||(30274732-30274778)
chr2 (1-46)||(25820811-25820856)
chr2 (1-50)||(25870879-25870928)
chr2 (1-50)||(25874276-25874325)
[»] chr7 (23 HSPs)
chr7 (2-182)||(10469245-10469426)
chr7 (1-178)||(20080554-20080732)
chr7 (1-179)||(3067812-3067991)
chr7 (1-179)||(9132598-9132774)
chr7 (1-178)||(14683278-14683458)
chr7 (1-182)||(26135962-26136142)
chr7 (1-182)||(26144342-26144522)
chr7 (1-182)||(37165981-37166161)
chr7 (1-99)||(10345295-10345393)
chr7 (1-182)||(13842740-13842920)
chr7 (1-56)||(45290439-45290494)
chr7 (1-56)||(37415382-37415437)
chr7 (1-56)||(45287028-45287083)
chr7 (1-92)||(22611635-22611724)
chr7 (1-56)||(23224864-23224919)
chr7 (1-47)||(4595977-4596023)
chr7 (1-47)||(11919833-11919879)
chr7 (1-47)||(17730914-17730960)
chr7 (1-47)||(20594363-20594409)
chr7 (1-48)||(11398016-11398063)
chr7 (1-48)||(16165849-16165896)
chr7 (1-47)||(4542897-4542943)
chr7 (1-47)||(8277086-8277132)
[»] scaffold0035 (2 HSPs)
scaffold0035 (3-182)||(63974-64154)
scaffold0035 (1-31)||(62630-62660)
[»] scaffold0065 (2 HSPs)
scaffold0065 (2-179)||(58511-58689)
scaffold0065 (35-116)||(58314-58395)
[»] chr4 (39 HSPs)
chr4 (1-182)||(29544701-29544883)
chr4 (2-182)||(53009386-53009566)
chr4 (1-182)||(30392681-30392863)
chr4 (1-181)||(21419901-21420079)
chr4 (1-181)||(25962171-25962349)
chr4 (1-178)||(40493201-40493376)
chr4 (1-182)||(11195788-11195964)
chr4 (1-181)||(18672912-18673091)
chr4 (1-115)||(35510104-35510218)
chr4 (1-178)||(46955311-46955487)
chr4 (1-56)||(34017735-34017790)
chr4 (1-56)||(40616762-40616817)
chr4 (1-56)||(52530889-52530944)
chr4 (1-56)||(5670690-5670745)
chr4 (1-56)||(5673008-5673063)
chr4 (1-56)||(39501761-39501816)
chr4 (1-55)||(48637618-48637672)
chr4 (1-49)||(3797769-3797817)
chr4 (1-56)||(24150785-24150840)
chr4 (1-56)||(39498422-39498477)
chr4 (1-47)||(15445328-15445374)
chr4 (1-47)||(19827528-19827574)
chr4 (1-47)||(27014376-27014422)
chr4 (1-47)||(38283452-38283498)
chr4 (1-49)||(19859483-19859531)
chr4 (1-49)||(19864478-19864526)
chr4 (1-48)||(15405043-15405090)
chr4 (1-48)||(33927085-33927132)
chr4 (1-48)||(56195640-56195687)
chr4 (1-47)||(12783017-12783063)
chr4 (1-47)||(15429819-15429865)
chr4 (1-47)||(15436433-15436479)
chr4 (1-47)||(19820840-19820886)
chr4 (1-47)||(40903046-40903092)
chr4 (1-31)||(44164895-44164925)
chr4 (1-47)||(52006494-52006540)
chr4 (1-46)||(18911611-18911656)
chr4 (3-48)||(33408279-33408324)
chr4 (1-45)||(37103181-37103225)
[»] chr3 (60 HSPs)
chr3 (1-181)||(37408879-37409060)
chr3 (1-182)||(17141606-17141788)
chr3 (1-185)||(52990898-52991081)
chr3 (1-178)||(54720169-54720348)
chr3 (1-182)||(17528577-17528757)
chr3 (1-182)||(17531472-17531652)
chr3 (1-99)||(46885138-46885236)
chr3 (1-182)||(22416650-22416830)
chr3 (41-178)||(34983609-34983747)
chr3 (1-178)||(25442680-25442855)
chr3 (1-182)||(32366946-32367126)
chr3 (1-182)||(48063855-48064031)
chr3 (1-182)||(12561041-12561230)
chr3 (1-178)||(27092092-27092272)
chr3 (1-118)||(17039900-17040018)
chr3 (8-118)||(25486338-25486449)
chr3 (2-99)||(28007968-28008066)
chr3 (2-178)||(35751640-35751816)
chr3 (77-181)||(15195161-15195266)
chr3 (1-56)||(6434719-6434774)
chr3 (135-182)||(46885245-46885292)
chr3 (1-56)||(6922718-6922773)
chr3 (1-56)||(7486769-7486824)
chr3 (1-56)||(11190725-11190780)
chr3 (1-56)||(28266115-28266170)
chr3 (1-56)||(53816026-53816081)
chr3 (1-121)||(11784964-11785089)
chr3 (1-118)||(30219881-30220001)
chr3 (1-56)||(23298556-23298611)
chr3 (1-56)||(24125697-24125752)
chr3 (1-56)||(24128974-24129029)
chr3 (1-47)||(43927033-43927079)
chr3 (1-49)||(2873762-2873810)
chr3 (1-49)||(32287271-32287319)
chr3 (1-49)||(34983801-34983849)
chr3 (1-52)||(539025-539076)
chr3 (1-56)||(16184628-16184683)
chr3 (1-56)||(30690934-30690989)
chr3 (1-56)||(43809778-43809833)
chr3 (1-56)||(54723940-54723995)
chr3 (1-47)||(2775680-2775726)
chr3 (1-47)||(2778923-2778969)
chr3 (1-47)||(8461437-8461483)
chr3 (1-47)||(10902138-10902184)
chr3 (1-47)||(16244071-16244117)
chr3 (1-47)||(20728597-20728643)
chr3 (1-47)||(25584875-25584921)
chr3 (1-47)||(29343824-29343870)
chr3 (1-47)||(45896579-45896625)
chr3 (1-45)||(10885055-10885099)
chr3 (4-48)||(47051697-47051741)
chr3 (1-48)||(50461497-50461544)
chr3 (1-31)||(10881678-10881708)
chr3 (1-47)||(49742869-49742915)
chr3 (1-47)||(52309565-52309611)
chr3 (1-46)||(55031947-55031992)
chr3 (1-46)||(55034807-55034852)
chr3 (150-182)||(11785121-11785153)
chr3 (1-49)||(22993644-22993692)
chr3 (8-48)||(47055131-47055171)
[»] chr6 (28 HSPs)
chr6 (1-182)||(26896086-26896268)
chr6 (1-178)||(4512591-4512768)
chr6 (1-182)||(24400294-24400474)
chr6 (1-182)||(7128414-7128594)
chr6 (1-182)||(18855854-18856034)
chr6 (1-178)||(19476117-19476293)
chr6 (1-182)||(24410413-24410593)
chr6 (1-181)||(24155196-24155375)
chr6 (1-178)||(13947133-13947305)
chr6 (2-118)||(32109784-32109900)
chr6 (1-176)||(22560995-22561172)
chr6 (1-178)||(28230709-28230887)
chr6 (1-118)||(11125589-11125706)
chr6 (1-56)||(3596735-3596790)
chr6 (1-56)||(23384706-23384761)
chr6 (1-56)||(2379345-2379400)
chr6 (1-56)||(26942389-26942444)
chr6 (1-53)||(9839351-9839403)
chr6 (1-56)||(11402372-11402427)
chr6 (1-47)||(17106573-17106619)
chr6 (1-47)||(30655559-30655605)
chr6 (1-49)||(6513371-6513419)
chr6 (1-49)||(13005304-13005352)
chr6 (1-49)||(14281481-14281529)
chr6 (1-47)||(9954078-9954124)
chr6 (5-49)||(2372372-2372416)
chr6 (5-49)||(2372448-2372492)
chr6 (1-49)||(28107748-28107796)
[»] scaffold0191 (1 HSPs)
scaffold0191 (1-178)||(4029-4205)
[»] chr8 (31 HSPs)
chr8 (2-178)||(33419767-33419942)
chr8 (1-178)||(44026924-44027102)
chr8 (1-182)||(31284784-31284964)
chr8 (1-182)||(23619194-23619373)
chr8 (1-178)||(8911759-8911935)
chr8 (1-117)||(12516344-12516461)
chr8 (1-118)||(17931091-17931209)
chr8 (1-118)||(21279661-21279778)
chr8 (33-178)||(5253184-5253329)
chr8 (1-56)||(10498168-10498223)
chr8 (133-182)||(23612380-23612429)
chr8 (131-179)||(10498083-10498131)
chr8 (1-56)||(16953887-16953942)
chr8 (1-118)||(13196967-13197085)
chr8 (1-182)||(2560663-2560845)
chr8 (1-50)||(33883310-33883359)
chr8 (1-53)||(5980270-5980322)
chr8 (1-49)||(14421856-14421904)
chr8 (1-47)||(5584359-5584405)
chr8 (1-47)||(20887645-20887691)
chr8 (1-50)||(38248359-38248408)
chr8 (1-45)||(18721246-18721290)
chr8 (1-49)||(25231191-25231239)
chr8 (1-56)||(10664009-10664064)
chr8 (1-48)||(14589583-14589630)
chr8 (1-48)||(18825849-18825896)
chr8 (1-48)||(36710598-36710645)
chr8 (1-48)||(45155231-45155278)
chr8 (1-47)||(22173886-22173932)
chr8 (1-47)||(25591442-25591488)
chr8 (2-47)||(25594620-25594665)
[»] chr5 (31 HSPs)
chr5 (1-178)||(23044255-23044432)
chr5 (1-182)||(26292904-26293084)
chr5 (1-182)||(12058321-12058501)
chr5 (1-182)||(17748553-17748733)
chr5 (1-178)||(17664664-17664842)
chr5 (1-117)||(20055887-20056004)
chr5 (1-182)||(12088071-12088251)
chr5 (1-182)||(34132812-34132992)
chr5 (1-182)||(34143043-34143223)
chr5 (1-118)||(18952806-18952924)
chr5 (1-182)||(22131343-22131525)
chr5 (81-182)||(26907245-26907348)
chr5 (1-114)||(26895499-26895613)
chr5 (1-178)||(11959025-11959187)
chr5 (1-49)||(26907416-26907464)
chr5 (1-56)||(31863828-31863883)
chr5 (131-178)||(35049817-35049864)
chr5 (1-54)||(21332636-21332689)
chr5 (3-56)||(43491871-43491924)
chr5 (1-56)||(26752655-26752710)
chr5 (77-118)||(20056030-20056071)
chr5 (1-58)||(40583362-40583419)
chr5 (1-47)||(41876727-41876773)
chr5 (2-54)||(21335654-21335706)
chr5 (1-45)||(30066422-30066466)
chr5 (8-56)||(37215164-37215212)
chr5 (1-48)||(14016100-14016147)
chr5 (1-31)||(4099496-4099526)
chr5 (1-31)||(7271129-7271159)
chr5 (1-31)||(33552234-33552264)
chr5 (1-31)||(41306506-41306536)
[»] chr1 (21 HSPs)
chr1 (1-175)||(905519-905694)
chr1 (1-178)||(27354774-27354953)
chr1 (1-117)||(672962-673079)
chr1 (1-56)||(3796780-3796835)
chr1 (4-65)||(29643166-29643227)
chr1 (1-56)||(20398968-20399023)
chr1 (1-56)||(23021877-23021932)
chr1 (1-56)||(28111171-28111226)
chr1 (1-50)||(49498457-49498506)
chr1 (1-47)||(45941531-45941577)
chr1 (2-47)||(21018430-21018475)
chr1 (1-45)||(1950420-1950464)
chr1 (1-56)||(2794342-2794397)
chr1 (1-48)||(27536493-27536540)
chr1 (1-48)||(31204953-31205000)
chr1 (1-48)||(37183825-37183872)
chr1 (1-47)||(21107254-21107300)
chr1 (1-47)||(21111121-21111167)
chr1 (1-47)||(21114461-21114507)
chr1 (1-47)||(41058265-41058311)
chr1 (1-47)||(45960707-45960753)
[»] scaffold0218 (1 HSPs)
scaffold0218 (1-182)||(10522-10700)
[»] scaffold0807 (1 HSPs)
scaffold0807 (1-178)||(1905-2082)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-182)||(15525-15705)
[»] scaffold0084 (2 HSPs)
scaffold0084 (1-182)||(19393-19573)
scaffold0084 (2-115)||(29479-29590)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-181)||(14149-14328)
[»] scaffold0066 (1 HSPs)
scaffold0066 (1-116)||(57483-57598)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-178)||(31207-31384)
[»] scaffold0321 (2 HSPs)
scaffold0321 (1-49)||(2966-3014)
scaffold0321 (41-118)||(2864-2942)
[»] scaffold0056 (1 HSPs)
scaffold0056 (11-178)||(65155-65322)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-56)||(7666-7721)
[»] scaffold0427 (1 HSPs)
scaffold0427 (1-56)||(3742-3797)
[»] scaffold0412 (1 HSPs)
scaffold0412 (1-56)||(244-299)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-50)||(293136-293185)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-56)||(19509-19564)
[»] scaffold0381 (1 HSPs)
scaffold0381 (1-47)||(5361-5407)
[»] scaffold0080 (1 HSPs)
scaffold0080 (1-47)||(27222-27268)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-47)||(198260-198306)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-47)||(248631-248677)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-48)||(89883-89930)
[»] scaffold2073 (1 HSPs)
scaffold2073 (1-31)||(846-876)
[»] scaffold1809 (1 HSPs)
scaffold1809 (1-47)||(178-224)
[»] scaffold1785 (1 HSPs)
scaffold1785 (1-31)||(20-50)
[»] scaffold1755 (1 HSPs)
scaffold1755 (1-47)||(234-280)
[»] scaffold0757 (1 HSPs)
scaffold0757 (1-47)||(5465-5511)
[»] scaffold0009 (2 HSPs)
scaffold0009 (80-118)||(242263-242301)
scaffold0009 (1-30)||(241613-241642)
[»] scaffold1208 (1 HSPs)
scaffold1208 (1-30)||(298-327)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12219891 - 12220069
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12219891 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaatcaacctttactttttgtcgttaattttatgcaaacaaac 12219990  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12219991 caatcaactgcctagtggcaaatcaaaaaaacttttatacatcctaacttacaacgtaattgaattattgagattaaaa 12220069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3875382 - 3875562
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||| ||||| ||| |||| ||||||||||||||||||||    
T  3875382 caattaggggaacataggtgattcgaaagacctaaactcatctttctcttattcttaaaaccaatctttattttctgtcattacttttatgcaaacaaac 3875481  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacc 180  Q
    |||||||||| ||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3875482 caatcaactgactagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaacc 3875562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 37937229 - 37937050
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| |   |||||||||||||||||||||    
T  37937229 caattaggggaacatcgatgattcgaaagacctaaactcatctctctcttattcttaaaaccaatctttattttct---gttacttttatgcaaacaaac 37937133  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||| |||||||||||| |||||       ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  37937132 caatctactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtagttgaattattgaaattaaaaccag 37937050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 22630936 - 22631117
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtc-gttacttttatgcaaacaaa 99  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| | ||  |||||||||||||||||||    
T  22630936 caattaagggaacataaatgattcgaaagacctaaactcatctctctcttattcttaaaaacaatctttattttctatcatttacttttatgcaaacaaa 22631035  T
Q  100 ccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacc 180  Q
    ||||||||||||||||||| |||||       |||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22631036 ccaatcaactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacataattaaattattgagattaaaacc 22631117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 17877201 - 17877383
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttactttta-tgcaaacaaa 99  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||    
T  17877201 caattaggggagcatcgatgattcgaaagacctaaactcatctccctcttattcttaaaaccaacttttactttctgtcgttacttttattgcaaacaaa 17877300  T
Q  100 ccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    ||||||||||| ||||||| ||| |       |||||||||||| ||  ||||||||||||||||||||||| ||||||||||    
T  17877301 ccaatcaactgtctagtggcaaaacaaaagaacttttatacatcatattttacaacgtaattgaattattgaaattaaaacca 17877383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 40259149 - 40258969
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| ||| |||| || |  ||||||||||||||    
T  40259149 caattaggggaacatagatgattcgaacgacctaaactcatctctctcttattcttaaaaccaatctttattttctgtcattgc--ttatgcaaacaaac 40259052  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||| |||||||||| ||||        | |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  40259051 caatcaattgcctagtggcaaattaaaagaacctttatacatcctaatttacaacgtaattgaattatagagattaaaaccag 40258969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 16790767 - 16790587
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||     
T  16790767 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaat 16790670  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  16790669 caatcaactgcctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 16790587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 1386432 - 1386254
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| | ||| ||| |||  || |  |||||| |||||||    
T  1386432 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatc-ttattttctgttattgc--ttatgc-aacaaac 1386337  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        | |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1386336 caatcaactgcctagcggcaaattaaaagaacctttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 1386254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 23205351 - 23205447
Alignment:
Q  87 ttatgcaaacaaaccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23205351 ttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaataacttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 23205447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 23676955 - 23677051
Alignment:
Q  87 ttatgcaaacaaaccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23676955 ttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaataacttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 23677051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 12222150 - 12222089
Alignment:
Q  177 aaccagaccgtgttgggaaggaacaattttgaataccctttgcgatctaaaatacttgatgt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12222150 aaccagaccgtgttgggaaggaacaattttgaataccctttgcaatctaaaatacttgatgt 12222089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9966379 - 9966263
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattc-ttaaaatcaacctttactttttg-tcgttacttttatgcaaacaa 98  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||||||||| |||||| ||| ||||| ||| || | |||||||||||| || |||    
T  9966379 caattaggggaacatagatgattcaaaagacttgatctcatctctctcttattctttaaaaccaatctttattttatgttagttacttttatgtaatcaa 9966280  T
Q  99 accaatcaactgcctag 115  Q
    |||||||||||||||||    
T  9966279 accaatcaactgcctag 9966263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 16179222 - 16179420
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatc------------tctctcttattcttaaaatcaacctttactttttgtcgttactttt 88  Q
    ||||||||||||||| ||||||||||||||| ||||||||||            |||||||| || |||||| ||  ||||| |||||||| ||||||||    
T  16179222 caattaggggaacatcgatgattcgaaagacctaaactcatccccccctctctctctctcttgttattaaaaccagtctttattttttgtctttactttt 16179321  T
Q  89 atgcaaacaaaccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttaca----acgtaattgaattattgagattaaaaccag 182  Q
    ||||||||| ||||||||||| |||||||| ||| |       |||||||||||||||  |||||    ||||||||||||||||||||||||||||||    
T  16179322 atgcaaacagaccaatcaacttcctagtggcaaaacaaaataacttttatacatcctattttacaatgtacgtaattgaattattgagattaaaaccag 16179420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27266884 - 27267003
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattc-ttaaaatcaacctttacttt-ttgtcgttacttttatgcaaacaa 98  Q
    ||||||||||||||||||||||| ||||||| | | |||||||||||||||||| || ||| ||| |||||||||    |  ||||||||||||||  ||    
T  27266884 caattaggggaacatagatgatttgaaagacctgatctcatctctctcttattcttttaaaccaatctttactttccactaattacttttatgcaattaa 27266983  T
Q  99 accaatcaactgcctagtgg 118  Q
    ||||||||||||||||||||    
T  27266984 accaatcaactgcctagtgg 27267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8888731 - 8888786
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  8888731 caattaggggaacatagatgatttgaaagacctaatctcatctctctcttattctt 8888786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9185434 - 9185379
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  9185434 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 9185379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9188662 - 9188607
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  9188662 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 9188607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37279686 - 37279631
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  37279686 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 37279631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11347905 - 11347850
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||| ||||| ||||||    
T  11347905 caattaggggaacatagatgattcgaaagacctgatctcatctatctctcattctt 11347850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24235191 - 24235246
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||| ||||||||||| | | ||||||| ||||||||||||    
T  24235191 caattaggggaacatagataattcgaaagacctgatctcatctttctcttattctt 24235246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24238463 - 24238518
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||| ||||||||||| | | ||||||| ||||||||||||    
T  24238463 caattaggggaacatagataattcgaaagacctgatctcatctttctcttattctt 24238518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13137036 - 13137082
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  13137036 caattaggggaacatagatgattcgaaagacctgatctcatctctct 13137082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15470553 - 15470599
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  15470553 caattaggggaacatagatgattcgaaagacctgatctcatctctct 15470599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25959698 - 25959652
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  25959698 caattaggggaacatagatgattcgaaagacctgatctcatctctct 25959652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31585950 - 31585904
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  31585950 caattaggggaacatagatgattcgaaagacctgatctcatctctct 31585904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40781567 - 40781613
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  40781567 caattaggggaacatagatgattcgaaagacctgatctcatctctct 40781613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43207900 - 43207854
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  43207900 caattaggggaacatagatgattcgaaagacctgatctcatctctct 43207854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43723795 - 43723841
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  43723795 caattaggggaacatagatgattcgaaagacctgatctcatctctct 43723841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22021163 - 22021211
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||| ||||||||||||||||||||| | | |||||||||||||    
T  22021163 caattagggtaacatagatgattcgaaagaccttatctcatctctctct 22021211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29440590 - 29440645
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||| ||||||||| | | |||||||||||||| |||||    
T  29440590 caattagggaaacatagatgactcgaaagacctgatctcatctctctctttttctt 29440645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31427551 - 31427504
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  31427551 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 31427504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33310762 - 33310809
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  33310762 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 33310809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38015614 - 38015661
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  38015614 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 38015661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45457257 - 45457304
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||    
T  45457257 caattaggggaacttagatgattcgaaagacctgatctcatctctctc 45457304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 13971904 - 13971874
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  13971904 caattaggggaacatagatgattcgaaagac 13971874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30274778 - 30274732
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||| ||||||||||||||||||||||||   |||||||||||    
T  30274778 caattaggagaacatagatgattcgaaagacatgctctcatctctct 30274732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25820856 - 25820811
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctc 46  Q
    ||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  25820856 caattaggggaacatcgatgattcgaaagacctagtctcatctctc 25820811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25870879 - 25870928
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctctt 50  Q
    ||||||||| ||||||||||| ||||||||| | | ||||||||||||||    
T  25870879 caattagggaaacatagatgactcgaaagacctgatctcatctctctctt 25870928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25874276 - 25874325
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctctt 50  Q
    ||||||||| ||||||||||| ||||||||| | | ||||||||||||||    
T  25874276 caattagggaaacatagatgactcgaaagacctgatctcatctctctctt 25874325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 10469245 - 10469426
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacc 101  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  10469245 aattaggggaacatagatgattcgaaagatctaaactcatctctctcttattcttaaaatcaatctttactttttgttgttacttttatgcaaacaaacc 10469344  T
Q  102 aatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10469345 aatcaactgcctagtggaaaatcaaaataacttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 10469426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 20080732 - 20080554
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||| ||| |||| ||||||||||||||||||||    
T  20080732 caattaggggaacatagatgattcgaaagacttaaactcatctctctcttattcttaaaaccattctttattttctgtcattacttttatgcaaacaaac 20080633  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20080632 caatcaactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaa 20080554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 3067991 - 3067812
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||  ||||||| ||||||||||||||||||||    
T  3067991 caattaggggaacatagatgattcgaaagacctaaactcatgtctctcttattcttaaaaccaatctttaaattttgtcattacttttatgcaaacaaac 3067892  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaac 179  Q
    ||||||| |||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3067891 caatcaaatgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaac 3067812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 9132774 - 9132598
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||| |||||    
T  9132774 caattaggggaacatagatgattcgaaagacctaa-ctcatctctctcttattcttaaaaccaac-tttactttttg-cattacttttatgcaatcaaac 9132678  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaac 179  Q
    |||||||||||||||||| |||||       ||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  9132677 caatcaactgcctagtggcaaatcaaaataacttatatatatcctaacttacaacgtaattgaattatttagattaaaac 9132598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 14683458 - 14683278
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| ||| ||||| |||||||| |||||||||||||||||||     
T  14683458 caattaggggaacatagatgattcgaaagacctgatctcatctctcttttattcttaaaaccaatctttattttttgtctttacttttatgcaaacaaat 14683359  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttat--acatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| ||| |       |||||||  ||||||||  |||||||||||||||||||||||||||||||    
T  14683358 caatcaactgcctagtggcaaaacaaaataacttttatacacatcctagtttacaacgtaattgaattattgagattaaaa 14683278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 26136142 - 26135962
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||     
T  26136142 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaat 26136045  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        | |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26136044 caatcaactgcctagcggcaaattaaaagaacctttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 26135962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 26144522 - 26144342
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||     
T  26144522 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaat 26144425  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||| ||||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26144424 caatcaacttcctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 26144342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 37166161 - 37165981
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  37166161 caattaggggaacataaatgattcgaaagacctaaattcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaac 37166064  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| ||||        | |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  37166063 caatcaactgcctagtggcaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgtgattaaaaccag 37165981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10345295 - 10345393
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| |||| |||||||||||||||||||    
T  10345295 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccaatctttattttctgtcattacttttatgcaaacaaa 10345393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 13842740 - 13842920
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||| ||||| || ||||||||||||||| | | |||||||||||||||||||||||| ||| ||||| ||| |||  ||  | |||||||||||||     
T  13842740 caattacgggaatatcgatgattcgaaagacctgatctcatctctctcttattcttaaaaccaatctttattttctgttatt--tcttatgcaaacaaat 13842837  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| ||||        | |||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  13842838 caatcaactgcctagtggcaaattaaaagaacctttatatatcctaatttacaacgtaattgaattattgagattaaaaccag 13842920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45290494 - 45290439
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  45290494 caattaggggaacatagatgattcgaaagacctaatctcatctctctcttattctt 45290439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37415437 - 37415382
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  37415437 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 37415382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45287083 - 45287028
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  45287083 caattagggaaacatagatgattcgaaagacctaatctcatctctctcttattctt 45287028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 22611724 - 22611635
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgc 92  Q
    |||||||||||||||  |||||||||||||| ||||||||  ||| |||||||||||||| ||| ||||| ||| |||| ||| ||||||||    
T  22611724 caattaggggaacatcaatgattcgaaagacctaaactca--tctatcttattcttaaaaccaatctttattttctgtcattaattttatgc 22611635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23224919 - 23224864
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||    
T  23224919 caattaggggaacatagatgattcgaaagacctgatctcatctctctctcattctt 23224864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4596023 - 4595977
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  4596023 caattaggggaacatagatgattcgaaagacctgatctcatctctct 4595977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11919879 - 11919833
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  11919879 caattaggggaacatagatgattcgaaagacctgatctcatctctct 11919833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17730914 - 17730960
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||    
T  17730914 caattagggaaacatagatgattcgaaagacatgatctcatctctct 17730960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20594363 - 20594409
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  20594363 caattaggggaacatagatgattcgaaagacctgatctcatctctct 20594409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11398063 - 11398016
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  11398063 caattaggggaacatcgatgaatcgaaagacctaatctcatctctctc 11398016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16165849 - 16165896
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  16165849 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 16165896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4542897 - 4542943
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||||    
T  4542897 caattaggggaacatagatgattcggaagacctgatctcatctctct 4542943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8277086 - 8277132
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||||||| |||||||||| | | |||||||||||    
T  8277086 caattaggggaacatagatgcttcgaaagacctgatctcatctctct 8277132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 63974 - 64154
Alignment:
Q  3 attaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacca 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||    
T  63974 attaggggaacatagatgattcgaaagacctaaactcatctctctcttattctaaaaatcaatccttactttttgtcgttacttttatgcaaacatacca 64073  T
Q  103 atcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||| |||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  64074 atcaactgcctagtggcaaatcaaaataacttttatacatccttacttacaacgtaattgaattattgagattaaaaccag 64154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 62630 - 62660
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  62630 caattaggggaacatagatgattcgaaagac 62660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 58689 - 58511
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacc 101  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  58689 aattaggggaacatagatgattcgaaagatctaaactcatctatctcttattcttaaaatcaatctttactttttgttgttacttttatgcaaacaaacc 58590  T
Q  102 aatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaac 179  Q
    ||||||||||||||||| |||||       ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  58589 aatcaactgcctagtggcaaatcaaaataacttttatacgtcctaacttacaacgtaatttaattattgagattaaaac 58511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 58395 - 58314
Alignment:
Q  35 aactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaaccaatcaactgcctagt 116  Q
    |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  58395 aactcatctctctcttattcttaaaatcaatctttactttttattgttacttttatgcaaacaaaccaatcaactgcctagt 58314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 29544883 - 29544701
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29544883 caattagaggaacatcgatgattcgaaagacctaaactcatatctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaatcaaac 29544784  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| |||||       ||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  29544783 caatcaactgcctagtggcaaatcaaaatagcttttgtacatcctaacttacaacgtaattgaatgattgagatttaaaccag 29544701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 53009566 - 53009386
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacc 101  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| ||||| ||| |||| |||||||||||||||||||||    
T  53009566 aattaggggaacatagacgattcaaaagacctaaactcatctctctcttattcttaaaaccaatctttaatttctgtcattacttttatgcaaacaaacc 53009467  T
Q  102 aatcaactgcctagtggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53009466 aatcaactgcctagtggcaatcaaaagaaattttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 53009386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 30392681 - 30392863
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||    
T  30392681 caattaggggaacatatatgattggaaagacctaaactcatctctctcttattcttaaaaccaa-ctttactttctgtcgttacttttatgcaatcaaac 30392779  T
Q  101 caatcaactgcctagtgg-aaatc-nnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30392780 caatcaactgcctagtggcaaatcaaaaataacttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 30392863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 21419901 - 21420079
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |   |||||||||||||||||||||    
T  21419901 caattaggggaacatcgatgattcgaaagacctaaactcatctctctcttattcttaaaatcaatctttaatttct---gttacttttatgcaaacaaac 21419997  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    |||| ||||||||||||| |||||       ||||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  21419998 caataaactgcctagtggaaaatcaaaagaacttttatacatcaaaacttacaacgtagttgaattattgagattaaaacca 21420079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 25962171 - 25962349
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| |   |||||||||||||||||||||    
T  25962171 caattaggagaacatcgatgattcgaaagacctaaactcatctctctcttattcttaaaaccaatctttattttct---gttacttttatgcaaacaaac 25962267  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    ||||| |||||||||||| |||||       ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  25962268 caatctactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtagttgaattattgaaattaaaacca 25962349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 40493376 - 40493201
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | | ||||| ||| |   |||||||||||| ||||||||    
T  40493376 caattaggggaacatcgatgattcgaaagacctaaactcatatctctcttattcttaaaaccgatctttaatttat---gttacttttatgtaaacaaac 40493280  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40493279 caatcaactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtagttgaattattgagattaaaa 40493201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11195788 - 11195964
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||    
T  11195788 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccga-ctttactttttgtcgttatttttatgcaaacaaac 11195886  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||| | |||||||| |||||       |||||||||     |||||||||||| ||||||| |||||||||||||||||    
T  11195887 caatcaattacctagtggcaaatcaaaataacttttatac-----aacttacaacgtgattgaatgattgagattaaaaccag 11195964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 18673091 - 18672912
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||     
T  18673091 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttatgttattgc--ttatgcaaacaaat 18672994  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    ||||||||||||||| || ||||        |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  18672993 caatcaactgcctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaacca 18672912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 35510104 - 35510218
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||| ||| |||| ||||||||||||||||||||    
T  35510104 caattaggggaatatagatgattcgaaagacctaaactcatctctctcttaatcttaaaaccaatctttattttctgtcattacttttatgcaaacaaac 35510203  T
Q  101 caatcaactgcctag 115  Q
    |||||||||||||||    
T  35510204 caatcaactgcctag 35510218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 46955487 - 46955311
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| |||||||| |||||| ||| ||||||||||| |||||||||||| ||| ||||| ||| |||  ||||  |||||||||||| |    
T  46955487 caattaggggaacatcgatgattcaaaagacctaatctcatctctcttttattcttaaaaccaatctttattttctgttattac--ttatgcaaacaacc 46955390  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| |||         | |||||||||||||| |||||||||||||||||||||||||||||||    
T  46955389 caatcaactgcctagtggcaaactaaaagaacatttatacatcctaatttacaacgtaattgaattattgagattaaaa 46955311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34017790 - 34017735
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  34017790 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 34017735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40616817 - 40616762
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  40616817 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 40616762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52530944 - 52530889
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  52530944 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 52530889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5670690 - 5670745
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | | ||||||||||||||||||    
T  5670690 caattaggggaacatagatgattcgaaagacctgatcgcatctctctcttattctt 5670745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5673008 - 5673063
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | | ||||||||||||||||||    
T  5673008 caattaggggaacatagatgattcgaaagacctgatcgcatctctctcttattctt 5673063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39501761 - 39501816
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||    
T  39501761 caattaggggaacatagatgattcgaaagacctgatctcatctctctctcattctt 39501816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48637618 - 48637672
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattct 55  Q
    ||||||||| ||||||||||||||||||||| | | |||||||||||||||||||    
T  48637618 caattagggaaacatagatgattcgaaagacctgatctcatctctctcttattct 48637672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3797817 - 3797769
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||    
T  3797817 caattaggggaacatagatgattcgaaagacctgatctcatctctctct 3797769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24150785 - 24150840
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    |||||||||||||| |||||||||||||||| | | ||||||||||||| ||||||    
T  24150785 caattaggggaacacagatgattcgaaagacctgatctcatctctctctcattctt 24150840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39498422 - 39498477
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||| ||||||    
T  39498422 caattaggggaacttagatgattcgaaagacctgatctcatctctctctcattctt 39498477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15445374 - 15445328
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  15445374 caattaggggaacatagatgattcgaaagacctgatctcatctctct 15445328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19827528 - 19827574
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  19827528 caattaggggaacatagatgattcgaaagacctgatctcatctctct 19827574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27014376 - 27014422
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  27014376 caattaggggaacatagatgattcgaaagacctgatctcatctctct 27014422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38283498 - 38283452
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  38283498 caattaggggaacatagatgattcgaaagacctgatctcatctctct 38283452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19859531 - 19859483
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||| ||||||||||||||||||| | | |||||||||||||    
T  19859531 caattaggggatcatagatgattcgaaagacctgatctcatctctctct 19859483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19864526 - 19864478
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||| ||||||||||||||||||| | | |||||||||||||    
T  19864526 caattaggggatcatagatgattcgaaagacctgatctcatctctctct 19864478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15405090 - 15405043
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||    
T  15405090 caattaggggaacttagatgattcgaaagacctgatctcatctctctc 15405043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33927085 - 33927132
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  33927085 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 33927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 56195640 - 56195687
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  56195640 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 56195687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12783017 - 12783063
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||| ||||||||||||||||||||||| | | |||||||||||    
T  12783017 caattagaggaacatagatgattcgaaagacctgatctcatctctct 12783063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15429865 - 15429819
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||    
T  15429865 caattaggggaacatagatgattcaaaagacctgatctcatctctct 15429819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15436479 - 15436433
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||    
T  15436479 caattaggggaacatagatgattcaaaagacctgatctcatctctct 15436433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19820840 - 19820886
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||| |||||||||||||||| | | |||||||||||    
T  19820840 caattaggggaacaaagatgattcgaaagacctgatctcatctctct 19820886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40903092 - 40903046
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||    
T  40903092 caattaggggaacatagatgattctaaagacctgatctcatctctct 40903046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 44164895 - 44164925
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  44164895 caattaggggaacatagatgattcgaaagac 44164925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52006540 - 52006494
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| |   |||||||||||    
T  52006540 caattaggggaacatagatgattcgaaagacctggtctcatctctct 52006494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18911611 - 18911656
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctc 46  Q
    |||||||||||||||||||||||| |||||| ||  ||||||||||    
T  18911611 caattaggggaacatagatgattcaaaagacctagtctcatctctc 18911656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 33408324 - 33408279
Alignment:
Q  3 attaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||| |||| |||||||||||| |||||||||| |||||    
T  33408324 attaggggaacttagaggattcgaaagacctaaactcatcactctc 33408279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37103225 - 37103181
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctct 45  Q
    ||||||||| ||||||||||||||||||||| ||  |||||||||    
T  37103225 caattagggaaacatagatgattcgaaagacttagtctcatctct 37103181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 60)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 37408879 - 37409060
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||    
T  37408879 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaatcaatctttattttctgtcattacttttatgcaaacaaac 37408978  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    ||||||||||  |||||| |||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37408979 caatcaactgtttagtggcaaatcaaaagaacttttatacatcctagcttacaacgtaattgaattattgagattaaaacca 37409060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 17141606 - 17141788
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||| ||| ||||| ||| |||| |||||||| |||||||||||    
T  17141606 caattaggggaacatagataattcaaaagacctaagctcatctctctcttattcttaaaaccaatctttattttctgtcattacttttgtgcaaacaaac 17141705  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||  || ||| |||||       |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17141706 caatcaactgtttaatggcaaatcaaaagaacttttatacatcctaatttacaacgtaattgatttattgagattaaaaccag 17141788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 52990898 - 52991081
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||  || |  ||||||||| ||||    
T  52990898 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccaatctttattttttgttattgc--ttatgcaaataaac 52990995  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccagacc 185  Q
    |||||||||||||||||| |||||       | |||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||    
T  52990996 caatcaactgcctagtggcaaatcaaaataacctttatacatcttaatttacaacgtaattgaattattaagattaaaatcagacc 52991081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 54720169 - 54720348
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctc--tcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaa 98  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||  |||||||| | ||| ||| ||||| ||| |||| ||||||||||| ||||||    
T  54720169 caattatggaaacatagatgattcgaaagacctaaactcatctctctatcttattc-tcaaaccaatctttaatttctgtcattacttttatgtaaacaa 54720267  T
Q  99 accaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||| ||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54720268 accaatcaactgtctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaa 54720348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 17528757 - 17528577
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||| ||||| ||| |||| || |  ||||||||||||||    
T  17528757 caattaggggaacatagatgattcgaacgacctaatctcatctctctcttattcttaaaaccaatctttattttctgtcattgc--ttatgcaaacaaac 17528660  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| ||||        | |||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  17528659 caatcaactgcctagtggcaaattaaaagaacctttatacatcctaatttataacgtaattgtattattgagattaaaaccag 17528577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 17531652 - 17531472
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| ||| |||| || |  ||||||||||||||    
T  17531652 caattagaggaacatagatgattcgaacgacctaaactcatctctctcttattcttaaaaccaatctttattttctgtcattgc--ttatgcaaacaaac 17531555  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| | ||        | |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17531554 caatcaactgcctagtggcatattaaaagaacctttatacatcctaatttataacgtaattgaattattgagattaaaaccag 17531472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 46885138 - 46885236
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46885138 caattaggggaacatagatgattcgaaagacctaaactcatctctctcctattcttaaaatcaatctttactttttgtcgttacttttatgcaaacaaa 46885236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 22416830 - 22416650
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| |||  || |  |||||||||||||     
T  22416830 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccaatctttattttctgttattgc--ttatgcaaacaaaa 22416733  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||| |||||| || || |        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  22416732 caatcaaccgcctagcggcaatttaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 22416650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 34983747 - 34983609
Alignment:
Q  41 tctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaaccaatcaactgcctagtgg-aaatcnnnnnnncttttatac 139  Q
    ||||||||||||||| |||| ||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||       |||||||||    
T  34983747 tctctctcttattctcaaaaccaatctttaatttatgtcattacttttatgcaaacaaaccaatcaactgcctagtggtaaatcaaaagaacttttatac 34983648  T
Q  140 atcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    || ||||||||||||||||||||||||||||||||||||    
T  34983647 attctaacttacaacgtaattgaattattgagattaaaa 34983609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 25442855 - 25442680
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  25442855 caattaggggaacataaatgattcgaaagacctaaactcatctctctcttattctt-aaaccaatctttattttctgttattgc--ttatgcaaacaaac 25442759  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||||||||||| || ||||        | |||||||||||||| |||||||||||||||||||||||||||||||    
T  25442758 caatcaactgcctagcggcaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaa 25442680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 32367126 - 32366946
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||     
T  32367126 caattagggaaacatagatgattcgaaagacttaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaat 32367029  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        ||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  32367028 caatcaactgcctagcggcaaattaaaagaacttttatacttcttaagttacaacgtaattgaattattgagattaaaaccag 32366946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 48064031 - 48063855
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||| ||||| ||| |||| || |  |||||    |||||    
T  48064031 caattaggggaacatagatgattcgaacgacccaaactcatctctctcttattcttaaaaccaatctttattttctgtcattgc--ttatg----caaac 48063938  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||| ||||||||||| ||||        | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48063937 caatcatctgcctagtggaaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaaccag 48063855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 12561230 - 12561041
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaaccttta---ctt--tttgtcgttactt--ttatgca 93  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||   |||  |||   |||| ||  |||||||    
T  12561230 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttatatctttattttatgttaattgcttatgca 12561131  T
Q  94 aacaaaccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||||||| || ||||        |||||||||||| ||| ||| |||||| ||||||||||||||||||||||||    
T  12561130 aacaaaccaatcaactgcctagcggcaaattaaaagaacttttatacatcttaagttataacgtagttgaattattgagattaaaaccag 12561041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 27092092 - 27092272
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||||| |||||| ||||||||||||||| | | ||||||||||| |||||||| |||| ||  ||||||||| | ||||||||||||||||| ||||    
T  27092092 caattaggagaacatcgatgattcgaaagacctgatctcatctctctattattctttaaaaccattctttactttctatcgttacttttatgcaatcaaa 27092191  T
Q  100 ccaatcaactgcctagtgg-aaatc-nnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||| || ||||||| |||||        |||||||||||||||  | | |||||| ||||||||||||||||||||    
T  27092192 ccaatcaattgtctagtggcaaatcaatataaacttttatacatcctatttaataacgtacttgaattattgagattaaaa 27092272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 17040018 - 17039900
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||| |||||||| ||||||||||||||| | | ||||| |||||||||||||| |||| ||| ||||| ||| |||| |||||||||||||| ||||    
T  17040018 caattaagggaacatcgatgattcgaaagacctgatctcatttctctcttattctttaaaaccaatctttattttctgtcattacttttatgcaaccaaa 17039919  T
Q  100 ccaatcaactgcctagtgg 118  Q
    | |||||||||||||||||    
T  17039918 caaatcaactgcctagtgg 17039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 25486338 - 25486449
Alignment:
Q  8 gggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatc-aacctttactttttgtcgttacttttatgcaaacaaaccaatca 106  Q
    |||||||| |||||||||||| || | | |||| | ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| |||||||||||    
T  25486338 gggaacatcgatgattcgaaaaacctgatctcacccctctcttattcttaaaagccaatctttattttctgtcgttacttttatgcaatcaaaccaatca 25486437  T
Q  107 actgcctagtgg 118  Q
    ||| ||||||||    
T  25486438 actacctagtgg 25486449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 28008066 - 28007968
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattc-ttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||| || ||| ||||| ||| |||| |||||||||||||| ||||    
T  28008066 aatttggggaacatagatgattcgaaagacctaatctcatctctctcttattctttagaaccaatctttattttctgtcattacttttatgcaatcaaa 28007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 35751640 - 35751816
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctct-tattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||| ||||||||||||||| | | ||||||||||||  |||| |   |||||| ||| | ||| ||| |||| |||||||||| |||||    
T  35751640 aattaggggaacatcgatgattcgaaagacctgatctcatctctctccatattttcttaatcaatcttaa-tttctgttgttatttttatgcaa-caaac 35751737  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
     || |||||||||||||| |||||       |||||||||||||||  ||||||| |||||||||||||||||||||||    
T  35751738 aaaccaactgcctagtggcaaatcaaaataacttttatacatcctattttacaacataattgaattattgagattaaaa 35751816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 15195266 - 15195161
Alignment:
Q  77 gtcgttacttttatgcaaac-aaaccaatcaactgcctagtggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagatta 175  Q
    ||||||||||||||||||   |||||||||||||||||| ||| || |       |||||||||||||||  ||||||||||||||||||||||||||||    
T  15195266 gtcgttacttttatgcaatttaaaccaatcaactgcctactggcaaacaaaagaacttttatacatcctattttacaacgtaattgaattattgagatta 15195167  T
Q  176 aaacca 181  Q
    ||||||    
T  15195166 aaacca 15195161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6434774 - 6434719
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6434774 caattaggggaacatagatgattcgaaagacctaatctcatctctctcttattctt 6434719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 46885245 - 46885292
Alignment:
Q  135 tatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46885245 tatacatcctaacttacaacgtaattgaattattgagattaaaaccag 46885292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6922718 - 6922773
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  6922718 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 6922773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7486769 - 7486824
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  7486769 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 7486824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11190725 - 11190780
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  11190725 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 11190780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28266115 - 28266170
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  28266115 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 28266170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 53816026 - 53816081
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  53816026 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 53816081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 11784964 - 11785089
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc----ttattctt-aaaatcaacctttactttttgtcgttactttta-tgcaa 94  Q
    ||||||||||||||| ||||||||||||||| |||  |||||||||||    |||||||| ||||||||  | ||||||| ||  ||| ||||| |||||    
T  11784964 caattaggggaacatcgatgattcgaaagacctaagttcatctctctcttatttattcttcaaaatcaa-ttgtacttttagttattatttttattgcaa 11785062  T
Q  95 acaaaccaatcaactgcctagtggaaa 121  Q
    ||||||||||| |||||||||||||||    
T  11785063 acaaaccaatctactgcctagtggaaa 11785089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 30220001 - 30219881
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgtt--acttttatgcaaacaa 98  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||  ||   ||||||||||||  ||  ||  | |||||||||| |||    
T  30220001 caattaggggaacttagatgattcgaaagacatgatctcatctctctcatattctctaatcaaacctttactttcagttatttaaattttatgcaatcaa 30219902  T
Q  99 acc-aatcaactgcctagtgg 118  Q
    ||| |||||||||||||||||    
T  30219901 accaaatcaactgcctagtgg 30219881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23298611 - 23298556
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    |||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  23298611 caattaagggaacttagatgattcgaaagacctaatctcatctctctcttattctt 23298556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24125697 - 24125752
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||    
T  24125697 caattagggaaacatagatgattcgaaagacctgatctcatctctctcttattctt 24125752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24128974 - 24129029
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||    
T  24128974 caattagggaaacatagatgattcgaaagacctgatctcatctctctcttattctt 24129029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43927033 - 43927079
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||    
T  43927033 caattaggggaacatagatgattcgaaagacatgatctcatctctct 43927079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2873762 - 2873810
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||    
T  2873762 caattaggggaacatagatgattcgaaagacctgatctcatctctctct 2873810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32287319 - 32287271
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||    
T  32287319 caattaggggaacatagatgattcgaaagacctgatctcatctctctct 32287271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34983849 - 34983801
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  34983849 caatcaggggaacatagatcattcgaaagacctaaactcatctctctct 34983801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 539025 - 539076
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttat 52  Q
    ||||||||| |||||| |||||||||||||| ||| ||||||||||||||||    
T  539025 caattagggaaacatatatgattcgaaagacctaatctcatctctctcttat 539076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16184683 - 16184628
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||| ||||||||||||||| | | |||||||||||| |||||||    
T  16184683 caattaggggaacatcgatgattcgaaagacctgatctcatctctctcctattctt 16184628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30690934 - 30690989
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||||||||||||| | | || |||||||||||||||||    
T  30690934 caattagggaaacatagatgattcgaaagacctgatcttatctctctcttattctt 30690989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43809778 - 43809833
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||| ||||||||||||||| | | |||||||||||| |||||||    
T  43809778 caattaggggaacatcgatgattcgaaagacctgatctcatctctctcctattctt 43809833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 54723940 - 54723995
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    |||||| |||||||||||||||||| ||||| | | ||||||||||||||||||||    
T  54723940 caattatgggaacatagatgattcggaagacctgatctcatctctctcttattctt 54723995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2775680 - 2775726
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  2775680 caattaggggaacatagatgattcgaaagacctgatctcatctctct 2775726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2778923 - 2778969
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  2778923 caattaggggaacatagatgattcgaaagacctgatctcatctctct 2778969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8461483 - 8461437
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||||    
T  8461483 caattagggaaacatagatgattcgaaagacctaatctcatctctct 8461437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10902138 - 10902184
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  10902138 caattaggggaacatagatgattcgaaagacctgatctcatctctct 10902184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16244071 - 16244117
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  16244071 caattaggggaacatagatgattcgaaagacctgatctcatctctct 16244117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20728643 - 20728597
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  20728643 caattaggggaacatagatgattcgaaagacctgatctcatctctct 20728597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25584875 - 25584921
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  25584875 caattaggggaacatagatgattcgaaagacctgatctcatctctct 25584921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29343870 - 29343824
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  29343870 caattaggggaacatagatgattcgaaagacctgatctcatctctct 29343824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45896579 - 45896625
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  45896579 caattaggggaacatagatgattcgaaagacctgatctcatctctct 45896625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10885055 - 10885099
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctct 45  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||    
T  10885055 caattaggggaacatagatgattcgaaagacctagtctcatctct 10885099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 47051697 - 47051741
Alignment:
Q  4 ttaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    |||||||||||||||||||||||||||| | | ||||||||||||    
T  47051697 ttaggggaacatagatgattcgaaagacctgatctcatctctctc 47051741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50461544 - 50461497
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  50461544 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 50461497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 10881678 - 10881708
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  10881678 caattaggggaacatagatgattcgaaagac 10881708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49742915 - 49742869
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||| |||||||||||||| | | |||||||||||    
T  49742915 caattaggggaacataaatgattcgaaagacctgatctcatctctct 49742869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52309611 - 52309565
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||| ||||||||||||| | | |||||||||||    
T  52309611 caattaggggaacatagttgattcgaaagacctgatctcatctctct 52309565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 55031992 - 55031947
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctc 46  Q
    ||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  55031992 caattaggggaacatcgatgattcgaaagacctagtctcatctctc 55031947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 55034852 - 55034807
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctc 46  Q
    ||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  55034852 caattaggggaacatcgatgattcgaaagacctagtctcatctctc 55034807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 11785121 - 11785153
Alignment:
Q  150 acaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||||||||||||| ||||    
T  11785121 acaacgtaattgaattattgagattaaatccag 11785153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22993692 - 22993644
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||| |||| |||||||||||| ||  |||||||||||||    
T  22993692 caattaggggaacttagaggattcgaaagacctagtctcatctctctct 22993644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 47055131 - 47055171
Alignment:
Q  8 gggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    |||||||||||||||||||||||| | | ||||||||||||    
T  47055131 gggaacatagatgattcgaaagacctgatctcatctctctc 47055171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 26896268 - 26896086
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||| |||||||||||  ||||||||    
T  26896268 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaatcaatgtttaatttttgttgttacttttattgaaacaaac 26896169  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| |||||       ||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26896168 caatcaactgcctagtggaaaatcaaaataacttctatacatcctaacttacaacgtaattgaactattgagattaaaaccag 26896086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4512591 - 4512768
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| | |||||| |||||||||| |||||    
T  4512591 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccaa-ctttactttatttcgttaattttatgcaatcaaac 4512689  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| ||||        ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  4512690 caatcaactgcctagtggcaaataaaaataacttttgtacatcctaacttacaacgtaattgaattattgaaattaaaa 4512768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 24400294 - 24400474
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||  || |  ||||||||||||||    
T  24400294 caattagggaaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaatcaatctttattttctgttattgc--ttatgcaaacaaac 24400391  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24400392 caatcaactgcctagcggcaaattaaaagaacctttatacatcctaagttacaacgtaattgaattattgagattaaaaccag 24400474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 7128414 - 7128594
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  || ||||| ||| |||  || |  |||||||||||||     
T  7128414 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaactaaactttattttctgttattgc--ttatgcaaacaaat 7128511  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  7128512 caatcaactgcctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 7128594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 18856034 - 18855854
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  18856034 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaac 18855937  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| ||  |||        |||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  18855936 caatcaactgcctagcggccaattaaaagaacttttatacatcttaagttacaacggaattgaattattgagattaaaaccag 18855854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 19476117 - 19476293
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  19476117 caattaggggaacatagatgattcgaaagaccaaaattcatctctctcttattcttaaaaccaatctttattttctgttattgc--ttatgcaaacaaac 19476214  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||||||||||| || ||||        | |||||||||||||| |||||||||||||||||||||||||||||||    
T  19476215 caatcaactgcctagcggcaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaa 19476293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 24410413 - 24410593
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  24410413 caattagggaaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccaatctttattttctgttattgc--ttatgcaaacaaac 24410510  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        | |||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  24410511 caatcaactgcctagcggcaaattaaaagaacctttatatatcctaagttacaacgtaattgaattgttgagattaaaaccag 24410593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 24155375 - 24155196
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  24155375 caattaggggaacatatatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaac 24155278  T
Q  101 caatcaactgcctagtg-gaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    ||||||||||||||| |  ||||        | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24155277 caatcaactgcctagcgacaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaacca 24155196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13947133 - 13947305
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  13947133 caattaggggaacatagatgattcgaaagacctaaactcatctatctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaac 13947230  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||||||||||| || ||||        |||||    ||| ||| |||||||||||||||||||||||||||||||    
T  13947231 caatcaactgcctagcggcaaattaaaagaactttt----atcttaagttacaacgtaattgaattattgagattaaaa 13947305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 32109784 - 32109900
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacc 101  Q
    |||||||||||||| ||||||||||||||| | | ||||||||||| |||||||||||| ||| ||||| ||| |||||||||||||| |||| ||||||    
T  32109784 aattaggggaacattgatgattcgaaagacctgatctcatctctcttttattcttaaaaccaatctttattttctgtcgttacttttacgcaatcaaacc 32109883  T
Q  102 aatcaactgcctagtgg 118  Q
     ||||||| ||||||||    
T  32109884 catcaacttcctagtgg 32109900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 22561172 - 22560995
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattc-ttaaaatcaacctttactttttg-tcgttacttttatgcaaacaa 98  Q
    ||||||||||||| ||||||||| ||||||| | | |||||||||||||||||| || ||| ||| ||||| ||| || | ||||||||||||||| |||    
T  22561172 caattaggggaacgtagatgatttgaaagacctgatctcatctctctcttattcttttaaaccaatctttattttctgttagttacttttatgcaatcaa 22561073  T
Q  99 accaatcaactgcctagtggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaa 176  Q
    ||||||||||||||||| | ||| |       |||||||||| ||||| | | ||||  |||||||||||||||||||    
T  22561072 accaatcaactgcctagggtaaaacaaaataacttttatacagcctaaataataacgctattgaattattgagattaa 22560995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 28230709 - 28230887
Alignment:
Q  1 caattagggg-aacatagatgattcgaaagacataaactcat-ctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaa 98  Q
    |||||||||| |||||| |||||||||||||| ||||||||| |||| |||||||||| ||| ||| ||||| ||| |||  || |||  ||||||||||    
T  28230709 caattaggggtaacataaatgattcgaaagacctaaactcattctctatcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaa 28230806  T
Q  99 accaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    | |||||||||| |||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  28230807 atcaatcaactgtctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaa 28230887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11125706 - 11125589
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| ||||||||||||||| | | | ||||||| |||||||||||||| ||| |||||  ||||||| ||| ||||||| || |||||    
T  11125706 caattaggggaacatcgatgattcgaaagacttgatcccatctctatcttattcttaaaaccaatctttatattttgtcattatttttatgtaatcaaac 11125607  T
Q  101 caatcaactgcctagtgg 118  Q
    ||||||  ||||||||||    
T  11125606 caatcagatgcctagtgg 11125589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3596790 - 3596735
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  3596790 caattaggggaacataaatgattcgaaagacctaatctcatctctctcttattctt 3596735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23384761 - 23384706
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  23384761 caattaggggaacatagatgaatcgaaagacctaatctcatctctctcttattctt 23384706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2379345 - 2379400
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||    
T  2379345 caattaggggaacatagatgatttgaaagacctgatctcatctctctcttattctt 2379400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26942444 - 26942389
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||    
T  26942444 caattaggggaacatagatgaatcgaaagacctgatctcatctctctcttattctt 26942389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9839403 - 9839351
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttatt 53  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||| ||||    
T  9839403 caattaggggaacatagatgattcgaaagacctgatctcatctctctcatatt 9839351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11402372 - 11402427
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||| ||||||||| | | ||||||||||||||||||||    
T  11402372 caattagggaaacatagatgaatcgaaagacctgatctcatctctctcttattctt 11402427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17106619 - 17106573
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  17106619 caattaggggaacatagatgattcgaaagacttgatctcatctctct 17106573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30655559 - 30655605
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  30655559 caattaggggaacatagatgattcgaaagacctgatctcatctctct 30655605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6513371 - 6513419
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    |||||||||||| |||||||||||||||||| | | |||||||||||||    
T  6513371 caattaggggaatatagatgattcgaaagacctgatctcatctctctct 6513419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13005304 - 13005352
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||| ||||||| | | |||||||||||||    
T  13005304 caattaggggaacatagatgatttgaaagacctgatctcatctctctct 13005352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14281529 - 14281481
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| | |  ||||||||||||    
T  14281529 caattaggggaacatagatgattcgaaagacctgatgtcatctctctct 14281481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9954078 - 9954124
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||  | | |||||||||||    
T  9954078 caattaggggaacatagatgattcgaaagagctgatctcatctctct 9954124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2372372 - 2372416
Alignment:
Q  5 taggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    |||||||||||||||||||||||||| || | |||| ||||||||    
T  2372372 taggggaacatagatgattcgaaagagatgatctcagctctctct 2372416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2372448 - 2372492
Alignment:
Q  5 taggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    |||||||||||||||||||||||||| || | |||| ||||||||    
T  2372448 taggggaacatagatgattcgaaagagatgatctcaactctctct 2372492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28107796 - 28107748
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    |||||||||||||||||||||||||||| || | |  ||||||||||||    
T  28107796 caattaggggaacatagatgattcgaaatacctgatatcatctctctct 28107748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4029 - 4205
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4029 caattagagaaacatagatgattcgaaagacctaaactcatctc--tcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 4126  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
     |||||||| |||||||| |||||       |||||||||||||||||||||||| |||||||||||||||||||||||    
T  4127 aaatcaacttcctagtggcaaatcaaaataacttttatacatcctaacttacaacataattgaattattgagattaaaa 4205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 33419767 - 33419942
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacc 101  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||| |||| |    
T  33419767 aattaggggaacataaatgattcgaaagacctaaactcatctctctcttcttcttaaaaccaa-ctttactttatgtcgttacttttatgcaatcaaaac 33419865  T
Q  102 aatcaactgcctagtggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||||||||||||| | ||       ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33419866 aatcaactgcctagtggcattcaaaataacttttatacatcctaacttacaacgtaattgaattatggagattaaaa 33419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44027102 - 44026924
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||| ||| |||  ||| |||||||||| |||||    
T  44027102 caattaggggaacatagatgattcgaaagacctaaactcatttctctcttattcttaaaaccaatctttaatttctgttattaattttatgcaatcaaac 44027003  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||| || ||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44027002 caatcaaatgtctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaa 44026924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 31284784 - 31284964
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  31284784 caattaggggaacatagatgattcgaatgacctaaactcatctctctcttattcttaaaaccaatctttattttctgttattgc--ttatgcaaacaaac 31284881  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||| |||||||| ||||        | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31284882 caatcaactacctagtggcaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaaccag 31284964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 23619373 - 23619194
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||     
T  23619373 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctt-aaaccaatctttattttctgttattgc--ttatgcaaacaaat 23619277  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23619276 caatcaactgcctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 23619194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8911759 - 8911935
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||||||||||||  ||| |||||||||||| |||||| ||||||||  |||||||||||  || ||| |  || | || |||||||||||||| |||||    
T  8911759 caattaggggaactcagaggattcgaaagacctaaacttatctctct--tattcttaaaactaatcttcaaattctatcattacttttatgcaaccaaac 8911856  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8911857 caatcaactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaa 8911935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12516461 - 12516344
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaa-aatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||||||||| |||||||||||||||||| | |  |||||||||||| |||||| | || ||| ||||| ||| ||||||||||||||||||| ||||    
T  12516461 caattaggggaatatagatgattcgaaagacctgatttcatctctctctcattctttacaaccaatctttattttctgtcgttacttttatgcaatcaaa 12516362  T
Q  100 ccaatcaactgcctagtg 117  Q
    ||||||||||||||||||    
T  12516361 ccaatcaactgcctagtg 12516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17931091 - 17931209
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||| || ||||| ||||||||||||||| ||| |||||||||||||| ||||| |||| ||| ||||| ||| |||| ||| |||||||||| ||||    
T  17931091 caattacggaaacatcgatgattcgaaagacctaatctcatctctctcttgttctttaaaaccaatctttattttctgtcattatttttatgcaatcaaa 17931190  T
Q  100 ccaatcaactgcctagtgg 118  Q
    |||||||||||||||||||    
T  17931191 ccaatcaactgcctagtgg 17931209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21279778 - 21279661
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| |||||||||||||||   | | ||||||||||| |||||||||| ||| ||||| ||| |||||||| |||||||||| | |||    
T  21279778 caattaggggaacatcgatgattcgaaagacccgatcacatctctctctcattcttaaaaccaatctttattttctgtcgttatttttatgcaatccaac 21279679  T
Q  101 caatcaactgcctagtgg 118  Q
    ||||| ||||||||||||    
T  21279678 caatctactgcctagtgg 21279661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 5253184 - 5253329
Alignment:
Q  33 taaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaaccaatcaactgcctagtgg-aaatcnnnnnnnc 131  Q
    |||||||||||||||||||||||||||| ||| ||||| ||| |||| ||||||||||||||||||||||||| ||||  |||| | ||| |       |    
T  5253184 taaactcatctctctcttattcttaaaaccaatctttattttctgtctttacttttatgcaaacaaaccaatctactgtttagtagcaaaacaaaataac 5253283  T
Q  132 ttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||| ||||||| ||  ||||||||||||||||||||||| |||||||    
T  5253284 ttt-atacatcatattttacaacgtaattgaattattgaaattaaaa 5253329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10498223 - 10498168
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10498223 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctt 10498168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 23612380 - 23612429
Alignment:
Q  133 tttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23612380 tttatacatcctaatttacaacgtaattgaattattgagattaaaaccag 23612429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 10498131 - 10498083
Alignment:
Q  131 cttttatacatcctaacttacaacgtaattgaattattgagattaaaac 179  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10498131 cttttatacatcctaagttacaacgtaattgaattattgagattaaaac 10498083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16953887 - 16953942
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  16953887 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 16953942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13196967 - 13197085
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattc-ttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||| | |||||||||||||| ||||||| | | ||||||| |||||||||| ||| || ||| ||||| |||  || |||||||||||| || ||||    
T  13196967 caattaagagaacatagatgatttgaaagacctgatctcatctatctcttattctttacaaccaatctttattttcagttgttacttttatggaatcaaa 13197066  T
Q  100 ccaatcaactgcctagtgg 118  Q
    | |||||||||||||||||    
T  13197067 caaatcaactgcctagtgg 13197085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 2560663 - 2560845
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||| | ||||| ||||| | ||||||| | | ||||| |||||||||||||||||| | | |||||  ||   || |||||||||||||| ||||     
T  2560663 caattagagaaacatcgatgacttgaaagacctgacctcatttctctcttattcttaaaaaccaactttaaattcaatctttacttttatgcaatcaaat 2560762  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||| ||| |||||||| ||||        | ||||||||||||   | | |||||||||||||||||||||||||||||||    
T  2560763 caatctactacctagtggcaaattaaaagaacctttatacatcctttttaataacgtaattgaattattgagattaaaaccag 2560845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33883359 - 33883310
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctctt 50  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  33883359 caattagggaaacatagatgattcgaaagacttaaactcacctctctctt 33883310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5980322 - 5980270
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttatt 53  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||| ||||    
T  5980322 caattaagggaacatagatgattcgaaagacatgatctcatctctctcatatt 5980270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14421856 - 14421904
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||    
T  14421856 caattaggggaacatagatgattcgaaagacctgatctcatctctctct 14421904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5584405 - 5584359
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  5584405 caattaggggaacatagatgattcgaaagacctgatctcatctctct 5584359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20887645 - 20887691
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  20887645 caattaggggaacatagatgattcgaaagacctgatctcatctctct 20887691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38248408 - 38248359
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctctt 50  Q
    ||||||||||||||||||||||||||||||| | | | ||||||||||||    
T  38248408 caattaggggaacatagatgattcgaaagacctgatcgcatctctctctt 38248359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18721290 - 18721246
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctct 45  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||    
T  18721290 caattaggggaacatagatgattcgaaagacctagtctcatctct 18721246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25231191 - 25231239
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| | | |||| ||||||||    
T  25231191 caattaggggaacatagatgattcgaaagacctgatctcaactctctct 25231239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10664009 - 10664064
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||| ||||||||| | | |||||||||||||| |||||    
T  10664009 caattagggaaacatagatgactcgaaagacctgatctcatctctctctttttctt 10664064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14589630 - 14589583
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| |||||||||||| || ||| ||||||||||||    
T  14589630 caattaggggaacatcgatgattcgaaatacctaatctcatctctctc 14589583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18825896 - 18825849
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  18825896 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 18825849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36710645 - 36710598
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  36710645 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 36710598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45155278 - 45155231
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||||||||||||||||||| | | |||| |||||||    
T  45155278 caattaggggaacatagatgattcgaaagacctgatctcagctctctc 45155231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22173932 - 22173886
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||| ||||||||||||||| | | |||||||||||    
T  22173932 caattaggggaacatcgatgattcgaaagacctgatctcatctctct 22173886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25591488 - 25591442
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||||||||||||||| || | | |||||||||||    
T  25591488 caattaggggaacatagatgattcgaaacacctgatctcatctctct 25591442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 25594665 - 25594620
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||    
T  25594665 aattaggggaagatagatgattcgaaagacctgatctcatctctct 25594620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 23044255 - 23044432
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||||||||    
T  23044255 caattaggggaacatagatgattcaaaagacctaaactcatctctctcttattctttaaaaccaac--ttactttttgtcgttacttttatgcaaacaaa 23044352  T
Q  100 ccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||||||||||||||| |||||       |||||||| || |||  |||||||||||||||||||||||||||||||    
T  23044353 ccaatcaactgcctagtggcaaatcaaaataacttttataaattctattttacaacgtaattgaattattgagattaaaa 23044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 26292904 - 26293084
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||    
T  26292904 caattagaggagcatagatgattcgaa-gacctaaactcatctctctcttattcttaaaaccaac-tttactttttgtcattacttttatgcaatcaaac 26293001  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| |||||       |||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  26293002 caatcaactgcctagtggcaaatcaaaagaacttttatacatcttaatttacaatgtaattgaattattgagattaaaaccag 26293084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 12058501 - 12058321
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  12058501 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaac 12058404  T
Q  101 caatcaactgcctag-tggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||| ||||||||||  | ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12058403 caattaactgcctagcagaaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 12058321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 17748553 - 17748733
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  17748553 caattaggggaacatagatgattcggaagatctaaactcatctctctcttattcttaaaaccaatctttattttatgttattgc--ttatgcaaacaaac 17748650  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        | |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  17748651 caatcaactgcctagcggcaaattaaaagaacctttatacatcctaatttacaacgtgattgaattattgagattaaaaccag 17748733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 17664664 - 17664842
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||| |||| |||||| | | ||||||||||| |||||||| ||| ||| ||||| ||| |||| |||||||||||||||||||     
T  17664664 caattaggggaacatagataattcaaaagacctgatctcatctctcttttattcttgaaaccaatctttattttatgtctttacttttatgcaaacaaat 17664763  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| ||| |       |||||||||||| ||  |||||| ||||||||||||||||||||||||    
T  17664764 caatcaactgcctagtggcaaaacaaaataacttttatacatcttagtttacaatgtaattgaattattgagattaaaa 17664842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 20055887 - 20056004
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| |||||||| ||||| ||| ||||||||||||||||||| ||||    
T  20055887 caattaggggaacatagatgattcgaaagacctcatctcatatctctcttattctttaaaatcaatctttattttctgtcgttacttttatgcaatcaaa 20055986  T
Q  100 ccaatcaactgcctagtg 117  Q
    ||||||||||||||||||    
T  20055987 ccaatcaactgcctagtg 20056004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 12088071 - 12088251
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||| ||||| ||| |||  || |  |||||||||||||     
T  12088071 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttagtcttaaatccaatctttattttctgttattgc--ttatgcaaacaaaa 12088168  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||| |||||| || || |        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12088169 caatcaaccgcctagcggcaatttaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 12088251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 34132992 - 34132812
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||| ||||| ||| |||  || |  |||||||||||||     
T  34132992 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttagtcttaaatccaatctttattttctgttattgc--ttatgcaaacaaaa 34132895  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||| |||||| || || |        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  34132894 caatcaaccgcctagcggcaatttaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 34132812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 34143223 - 34143043
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||| ||||| ||| |||  || |  |||||||||||||     
T  34143223 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttagtcttaaatccaatctttattttctgttattgc--ttatgcaaacaaaa 34143126  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||| |||||| || || |        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  34143125 caatcaaccgcctagcggcaatttaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 34143043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18952806 - 18952924
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||||||||||||||||| ||||||  | | |||||||||||||||||||| |||| |||||||||||||  || ||||||||||||||||| ||    
T  18952806 caattaggggaacatagatgatttgaaagatttgatctcatctctctcttattctttaaaaccaacctttactttcagttgttacttttatgcaaacgaa 18952905  T
Q  100 ccaatcaactgcctagtgg 118  Q
    |||||||| ||||||||||    
T  18952906 ccaatcaattgcctagtgg 18952924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 22131343 - 22131525
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct-tattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||  |||| |   |||||| ||||| ||| ||| ||||||||||||||| ||||    
T  22131343 caattaggggaacatcgatgattcgaaagacctgatctcatctctctccatattttcttaatcaatctttattttctgttgttacttttatgcaa-caaa 22131441  T
Q  100 ccaatcaactgcctagtggaaat-cnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    | || |||||||||||||||||  |       |||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  22131442 caaaccaactgcctagtggaaaaactaaataacttttatacatcctaatttacaacgtaattgaattattgagattaaatccag 22131525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 26907348 - 26907245
Alignment:
Q  81 ttacttttatgcaaacaaa-ccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26907348 ttacttttatgcaaacaaaaccaatcaactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaacgtaattgaattattgagattaaaa 26907249  T
Q  179 ccag 182  Q
    ||||    
T  26907248 ccag 26907245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26895613 - 26895499
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattct-taaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||| || || | | ||||| ||||| ||||||||||||||||| ||||    
T  26895613 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattctctacaaccgagctttattttttatcgttacttttatgcaatcaaa 26895514  T
Q  100 ccaatcaactgccta 114  Q
    |||||||| ||||||    
T  26895513 ccaatcaattgccta 26895499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 11959187 - 11959025
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||   | | ||             ||||| ||||||||    
T  11959187 caattaggggaacatagatgattcgaaagacctaaactcatct--ctcttattcttaaaaccaa---taaatt-----------gcttatggaaacaaac 11959104  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||| |||||       | |||||||||||||| |||||||||||||||||||||||||||||||    
T  11959103 caatcaactgcctagtggcaaatcaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaa 11959025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26907464 - 26907416
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26907464 caattaggggaacatagatgattcgaaagacctaaactcatctctctct 26907416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31863828 - 31863883
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  31863828 caattaggggaacatagatgattcgaaagacctagtctcatctctctcttattctt 31863883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 35049864 - 35049817
Alignment:
Q  131 cttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  35049864 cttttatacatcctaacttacaacgtaattgaattactgagattaaaa 35049817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21332689 - 21332636
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattc 54  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  21332689 caattaggggaacatagatgattcgaaagacctgatctcatctctctcttattc 21332636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 43491871 - 43491924
Alignment:
Q  3 attaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  43491871 attaggggaacatagatgattcgaaagacctgatctcatctctctcttattctt 43491924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26752710 - 26752655
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    |||||||||||||||| |||||||||||||| | | ||||||||||||||||||||    
T  26752710 caattaggggaacataaatgattcgaaagacctgatctcatctctctcttattctt 26752655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 20056030 - 20056071
Alignment:
Q  77 gtcgttacttttatgcaaacaaaccaatcaactgcctagtgg 118  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  20056030 gtcgttacttttatgcaatcaaaccaatcaactgcctagtgg 20056071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40583362 - 40583419
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaa 58  Q
    |||||||| |||||| || |||||||||||| ||||||||||||||| ||||||||||    
T  40583362 caattaggagaacatcgaggattcgaaagacctaaactcatctctcttttattcttaa 40583419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41876773 - 41876727
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  41876773 caattaggggaacatagatgattcgaaagacctgatctcatctctct 41876727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 21335706 - 21335654
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattc 54  Q
    |||||||||||||||||||||||||||||| |   |||||||||| |||||||    
T  21335706 aattaggggaacatagatgattcgaaagacttggtctcatctctcgcttattc 21335654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30066422 - 30066466
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctct 45  Q
    ||||||||||||||||||||||||||||||| | | |||||||||    
T  30066422 caattaggggaacatagatgattcgaaagacctgatctcatctct 30066466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 37215164 - 37215212
Alignment:
Q  8 gggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    |||||| ||||||||||||||||| |||  |||||||||||||||||||    
T  37215164 gggaacttagatgattcgaaagacctaatttcatctctctcttattctt 37215212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14016147 - 14016100
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  14016147 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 14016100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4099526 - 4099496
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  4099526 caattaggggaacatagatgattcgaaagac 4099496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7271129 - 7271159
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  7271129 caattaggggaacatagatgattcgaaagac 7271159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33552234 - 33552264
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  33552234 caattaggggaacatagatgattcgaaagac 33552264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 41306536 - 41306506
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  41306536 caattaggggaacatagatgattcgaaagac 41306506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 905694 - 905519
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| |||||||| ||| | | ||||||||||| |||||||||||||||||||||||    
T  905694 caattagggaaacatagatgattcgaaagaccaaaactcatctctcttttattctttaaaaccaactttactttttatcgttacttttatgcaaacaaac 905595  T
Q  101 caatcaactgcctagtg-gaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagatta 175  Q
    ||||||| |||||||||  |||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  905594 caatcaaatgcctagtgtcaaatcaaaataacttttatacatcctaacttacaacgtaattgaattattgagatta 905519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27354953 - 27354774
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatc-aacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||||| |||||| || |||| ||||||| ||||||||||||||| |||||||||||| | || ||||| ||| |||| |||||||||||||||||||    
T  27354953 caattaggagaacatcgaggatttgaaagacctaaactcatctctcttttattcttaaaaaccaatctttattttctgtcattacttttatgcaaacaaa 27354854  T
Q  100 ccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
     |||||||||||||||||| |||||       |||||||||||||||  || |||| |||||||||||||||||||||||    
T  27354853 tcaatcaactgcctagtggcaaatcaaaagaacttttatacatcctattttgcaacataattgaattattgagattaaaa 27354774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 673079 - 672962
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattc-ttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    ||||||||| |||||||||||||||||| |||| | |||||||||||||||||| |||||| ||| ||||| ||| ||||||||||||||| ||| ||||    
T  673079 caattagggaaacatagatgattcgaaatacatgatctcatctctctcttattctttaaaaccaatctttattttatgtcgttacttttatccaatcaaa 672980  T
Q  100 ccaatcaactgcctagtg 117  Q
    ||||||||||||||||||    
T  672979 ccaatcaactgcctagtg 672962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3796835 - 3796780
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3796835 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctt 3796780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 29643227 - 29643166
Alignment:
Q  4 ttaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaac 65  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  29643227 ttaggggaacatcgatgattcgaaagacctaaactcatctctctcttattcttaaaaccaac 29643166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20398968 - 20399023
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||    
T  20398968 caattaggggaacatagatgactcgaaagacctgatctcatctctctcttattctt 20399023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23021932 - 23021877
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||    
T  23021932 caattaggggaacttagatgattcgaaagacctaatctcatctctatcttattctt 23021877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28111171 - 28111226
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||  | | ||||||||||||||||||||    
T  28111171 caattaggggaacatagatgattcgaaagatctgatctcatctctctcttattctt 28111226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49498506 - 49498457
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctctt 50  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  49498506 caattaggggaacttagatgattcgaaagacctaatctcatctctctctt 49498457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45941531 - 45941577
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  45941531 caattaggggaacatagatgattcgaaagacctgatctcatctctct 45941577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 21018475 - 21018430
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||||||||||||||||| | | |||||||||||    
T  21018475 aattaggggaacatagatgattcgaaagacctgatctcatctctct 21018430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1950464 - 1950420
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctct 45  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||    
T  1950464 caattaggggaacatagatgattcgaaagacctagtctcatctct 1950420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2794342 - 2794397
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||| ||||||||| | | |||||||||||||| |||||    
T  2794342 caattagggaaacatagatgactcgaaagacctgatctcatctctctctttttctt 2794397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27536540 - 27536493
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  27536540 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 27536493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31204953 - 31205000
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  31204953 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 31205000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37183872 - 37183825
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  37183872 caattaggggaacatcgatgattcgaaagacctgatctcatctctctc 37183825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21107300 - 21107254
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||| |||||||||||||||||||||| | | |||||||||||    
T  21107300 caattaggtgaacatagatgattcgaaagacctgatctcatctctct 21107254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21111167 - 21111121
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||| |||||||||||||||||||||| | | |||||||||||    
T  21111167 caattaggagaacatagatgattcgaaagacctgatctcatctctct 21111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21114507 - 21114461
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||| |||||||||||||||||||||| | | |||||||||||    
T  21114507 caattaggagaacatagatgattcgaaagacctgatctcatctctct 21114461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41058311 - 41058265
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||| ||||||||||||||||||||||| ||| ||| |||||||    
T  41058311 caattagaggaacatagatgattcgaaagacctaatctcttctctct 41058265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45960753 - 45960707
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||| ||||||||||||||| | | |||||||||||    
T  45960753 caattaggggaacatcgatgattcgaaagacctgatctcatctctct 45960707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 10522 - 10700
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| |||||||||||| || || ||||||||||||||||||||||||| ||| ||||| ||| |||   || ||||||| ||||||||    
T  10522 caattaggggaacatcgatgattcgaaatacctagactcatctctctcttattcttaaaaccaatctttaatttctgt---taattttatgtaaacaaac 10618  T
Q  101 caatcaactgcctagtggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    |||||||||||||||||| ||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10619 caatcaactgcctagtggcaatcaaaagaacttttatacatcctaacttacaacgtagttgaattattgagattaaaaccag 10700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 2082 - 1905
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||| || ||||||||||||||| |||||| ||| ||||| |||||||||||||| ||| | | ||||||||| ||||||||| |||||||||||||||    
T  2082 caattcggagaacatagatgattctaaagacctaagctcatatctctcttattctttaaaaccaactttactttatgtcgttacatttatgcaaacaaac 1983  T
Q  101 caatcaactgcctagtggaaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||| ||||||||| ||||       |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1982 caatcaaccgcctagtggcaatcaaaacaacttttaaacatcctaacttacaacgtaattgaattattgagattaaaa 1905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15525 - 15705
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||| ||| |||  ||||  ||||||||||||||    
T  15525 caattaggggaacatagatgattcgaaagacctaaactcatctctctcttattctttaaatgaatctttattttctgttattac--ttatgcaaacaaac 15622  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15623 caatcaactgcctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaaccag 15705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 19393 - 19573
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    |||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||  || |  ||||||||||||||    
T  19393 caatgaggtgaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaatcaaacgttattttttgttattgc--ttatgcaaacaaac 19490  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaaccag 182  Q
    ||||||||||||||| || ||||        | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19491 caatcaactgcctagcggcaaattaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaaccag 19573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 29479 - 29590
Alignment:
Q  2 aattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacc 101  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||  || |  |||||||||||||||    
T  29479 aattaggggaacatagatgattcgaaagacctaaactcatctctctcttattcttaaaaccaaactttattttttgttattgc--ttatgcaaacaaacc 29576  T
Q  102 aatcaactgcctag 115  Q
    ||||||||| ||||    
T  29577 aatcaactgtctag 29590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 14328 - 14149
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaac 100  Q
    ||||||||||||||| ||||||||||||||| | | ||||||||||| |||||||||||| ||| ||||| ||| |||  || |  ||||||||||||||    
T  14328 caattaggggaacatcgatgattcgaaagacctgatctcatctctcttttattcttaaaaccaatctttattttctgttattgc--ttatgcaaacaaac 14231  T
Q  101 caatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaacca 181  Q
    |||||||||||||||||| ||||          |||||||||||||| |||| |||||||||||||||||||||||||||||    
T  14230 caatcaactgcctagtggaaaattaaaagaatctttatacatcctaatttacgacgtaattgaattattgagattaaaacca 14149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 57598 - 57483
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt-aaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||| | |||||||||||||||||||||| | | |||||||||||||||||||| |||| ||| | ||| ||||||||||||||||||||||| ||||    
T  57598 caattatgtgaacatagatgattcgaaagacctgatctcatctctctcttattctttaaaaccaatcctta-tttttgtcgttacttttatgcaatcaaa 57500  T
Q  100 ccaatcaactgcctagt 116  Q
    |||||||||||||||||    
T  57499 ccaatcaactgcctagt 57483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 31207 - 31384
Alignment:
Q  1 caattagggg-aacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaa 99  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||| ||| |||  || |  |||||||||||||    
T  31207 caattaggggtaacataaatgattcgaaagacctaaactcatctctatcttattctttaaaccaatctttattttctgttattgc--ttatgcaaacaaa 31304  T
Q  100 ccaatcaactgcctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
     |||||||||| |||| || ||||        |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  31305 tcaatcaactgtctagcggcaaattaaaagaacttttatacatcttaagttacaacgtaattgaattattgagattaaaa 31384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3014 - 2966
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctct 49  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3014 caattaggggaacatagatgattcgaaagacctaaactcatctctctct 2966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 2942 - 2864
Alignment:
Q  41 tctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaac-aaaccaatcaactgcctagtgg 118  Q
    |||||||||||||||  ||| ||| ||||| ||| |||| |||||||||||||||| ||| ||||||||| ||||||||    
T  2942 tctctctcttattctctaaaccaatctttaatttctgtcattacttttatgcaaacaaaaacaatcaacttcctagtgg 2864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 65322 - 65155
Alignment:
Q  11 aacatagatgattcgaaagacataaactcatctctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaaccaatcaactg 110  Q
    ||||| || ||||| |||||| |||||||||||||||||||||||||| | ||| | ||| || |  | |||| |||||||||| | || ||||||| |     
T  65322 aacatcgacgattccaaagacctaaactcatctctctcttattcttaaca-caaacattatttctgttagttaattttatgcaatcgaatcaatcaaatt 65224  T
Q  111 cctagtgg-aaatcnnnnnnncttttatacatcctaacttacaacgtaattgaattattgagattaaaa 178  Q
    |||||||| |||||       |||||||||||||||  |||||||| ||||||| ||||||||||||||    
T  65223 cctagtggcaaatcaaaagaacttttatacatcctattttacaacgcaattgaaatattgagattaaaa 65155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7721 - 7666
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  7721 caattaggggaacatagatgattcgaaagacctgatctcatctctctcctattctt 7666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3797 - 3742
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||    
T  3797 caattagggtaacatagatgattcgaaagacctgatctcatctctctcttattctt 3742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 244 - 299
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||    
T  244 caattaggggaacatagatgattcgaaagacttgatctcatctctctctcattctt 299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 293136 - 293185
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctctt 50  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  293136 caattaggggaacatagatgattcgaaagacttgatctcatctctctctt 293185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19509 - 19564
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctcttattctt 56  Q
    ||||||| ||||||||||||||||||||||| | | ||||||||||||| ||||||    
T  19509 caattagaggaacatagatgattcgaaagacctgatctcatctctctctcattctt 19564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5407 - 5361
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  5407 caattaggggaacatagatgattcgaaagacctgatctcatctctct 5361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27222 - 27268
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  27222 caattaggggaacatagatgattcgaaagacctgatctcatctctct 27268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 198260 - 198306
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  198260 caattaggggaacatagatgattcgaaagacctgatctcatctctct 198306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 248631 - 248677
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  248631 caattaggggaacatagatgattcgaaagacctgatctcatctctct 248677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 89883 - 89930
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctctc 48  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||    
T  89883 caattaggggaacttagatgattcgaaagacctgatctcatctctctc 89930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 876 - 846
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  876 caattaggggaacatagatgattcgaaagac 846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 178 - 224
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||| |||||||||||||| | | |||||||||||    
T  178 caattaggggaacatatatgattcgaaagacctgatctcatctctct 224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1785 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1785
Description:

Target: scaffold1785; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 20 - 50
Alignment:
Q  1 caattaggggaacatagatgattcgaaagac 31  Q
    |||||||||||||||||||||||||||||||    
T  20 caattaggggaacatagatgattcgaaagac 50  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1755 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 234 - 280
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||||||| |||||||||||||| | | |||||||||||    
T  234 caattaggggaacatatatgattcgaaagacctgatctcatctctct 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5465 - 5511
Alignment:
Q  1 caattaggggaacatagatgattcgaaagacataaactcatctctct 47  Q
    |||||||||||| |||||||||||||||||| | | |||||||||||    
T  5465 caattaggggaatatagatgattcgaaagacctgatctcatctctct 5511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 242263 - 242301
Alignment:
Q  80 gttacttttatgcaaacaaaccaatcaactgcctagtgg 118  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  242263 gttacttttatgcaatcaaacaaatcaactgcctagtgg 242301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 241613 - 241642
Alignment:
Q  1 caattaggggaacatagatgattcgaaaga 30  Q
    ||||||||||||||||||||||||||||||    
T  241613 caattaggggaacatagatgattcgaaaga 241642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1208 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1208
Description:

Target: scaffold1208; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 298 - 327
Alignment:
Q  1 caattaggggaacatagatgattcgaaaga 30  Q
    ||||||||||||||||||||||||||||||    
T  298 caattaggggaacatagatgattcgaaaga 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University