View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_28 (Length: 478)
Name: NF10829A_low_28
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_28 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 3036382 - 3036837
Alignment:
| Q |
1 |
tcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036382 |
tcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatcta |
3036481 |
T |
|
| Q |
101 |
atgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036482 |
atgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagc |
3036581 |
T |
|
| Q |
201 |
tttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3036582 |
tttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagat |
3036681 |
T |
|
| Q |
301 |
tctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaa |
399 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036682 |
tctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaa |
3036781 |
T |
|
| Q |
400 |
ttgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036782 |
ttgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
3036837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 2 - 455
Target Start/End: Original strand, 16863130 - 16863584
Alignment:
| Q |
2 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| | ||||| || |
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|
| T |
16863130 |
cacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaatcaaa |
16863229 |
T |
|
| Q |
102 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
201 |
Q |
| |
|
|||||| ||| || ||| || |||||||||| || || |||||||||||||||| |||||| ||| |||| |||||||||||||||||||| |||||| |
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|
| T |
16863230 |
tgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagct |
16863329 |
T |
|
| Q |
202 |
ttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagatt |
301 |
Q |
| |
|
||||||| || ||||| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| | |
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|
| T |
16863330 |
ttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaa |
16863429 |
T |
|
| Q |
302 |
ctattgagtgtta-taagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaat |
400 |
Q |
| |
|
| |||| || || ||||||||| |||||||||||||||| ||||||||||| ||||||| | |||||||| | |||| | | |||||||||||||||| |
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|
| T |
16863430 |
gtgttgaatgctacaaagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaat |
16863529 |
T |
|
| Q |
401 |
tgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
455 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16863530 |
tgcttctgatggctcaatcatgtttgaacacaaatgccaaagatgaggtatggtt |
16863584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 455
Target Start/End: Original strand, 20528758 - 20529205
Alignment:
| Q |
6 |
tggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgat |
105 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
20528758 |
tggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
20528857 |
T |
|
| Q |
106 |
gtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttga |
205 |
Q |
| |
|
||||| || | | ||| ||||| | || ||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| |||||||||||||| |
|
|
| T |
20528858 |
gtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttga |
20528957 |
T |
|
| Q |
206 |
aggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctat |
305 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| | |
|
|
| T |
20528958 |
aggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagt |
20529055 |
T |
|
| Q |
306 |
tgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgctt |
405 |
Q |
| |
|
||| || ||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | | |
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|
| T |
20529056 |
tgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcat |
20529155 |
T |
|
| Q |
406 |
ctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
455 |
Q |
| |
|
|| ||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
20529156 |
ctcatggctcaaacatgattgaacacaaatgtcaaagatgaggtatggtt |
20529205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 2 - 455
Target Start/End: Complemental strand, 40613240 - 40612799
Alignment:
| Q |
2 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
101 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
|
|
| T |
40613240 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
40613141 |
T |
|
| Q |
102 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
201 |
Q |
| |
|
|| || ||| || | | || ||||| | |||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
40613140 |
cgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagct |
40613041 |
T |
|
| Q |
202 |
ttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagatt |
301 |
Q |
| |
|
||||||||||| ||||| | |||||| | |||| | ||||||||||||||| ||||||||||||||||||| ||||||||| || |
|
|
| T |
40613040 |
ttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaaagcaa |
40612953 |
T |
|
| Q |
302 |
ctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaatt |
401 |
Q |
| |
|
| ||||||||| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| |
|
|
| T |
40612952 |
gtgttgagtgttttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaatt |
40612853 |
T |
|
| Q |
402 |
gcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
455 |
Q |
| |
|
||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40612852 |
acttcttatggcccaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
40612799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 20542082 - 20542289
Alignment:
| Q |
2 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
101 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
|
|
| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
|
| Q |
102 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
201 |
Q |
| |
|
||| || ||| | | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
|
| Q |
202 |
ttgaaggt |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
20542282 |
ttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 267 - 455
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
267 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
366 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
367 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
455 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
29 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
111 |
Q |
| |
|
|||| |||||||||||| | ||||| ||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 29945214 - 29945174
Alignment:
| Q |
67 |
ttcaattatgtggtgtgctctattgaagaatctaatgatgt |
107 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
29945174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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