View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_282 (Length: 251)

Name: NF10829A_low_282
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_282
NF10829A_low_282
[»] chr4 (4 HSPs)
chr4 (138-179)||(45088872-45088913)
chr4 (198-248)||(44668633-44668683)
chr4 (198-248)||(44687909-44687959)
chr4 (219-248)||(45095432-45095461)
[»] chr1 (4 HSPs)
chr1 (215-248)||(43986172-43986205)
chr1 (217-248)||(43983365-43983396)
chr1 (201-248)||(44004750-44004797)
chr1 (210-248)||(19567332-19567370)
[»] chr8 (1 HSPs)
chr8 (2-37)||(42694632-42694667)
[»] chr7 (1 HSPs)
chr7 (215-248)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (202-247)||(24002368-24002413)


Alignment Details
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 45088872 - 45088913
Alignment:
Q  138 tctcagcagaaggacaccgttttctgaaatgaacaaggcatc 179  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  45088872 tctcagcagaagaacaccgttttcagaaatgaacaaggcatc 45088913  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 44668633 - 44668683
Alignment:
Q  198 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 248  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44668633 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44668683  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 44687909 - 44687959
Alignment:
Q  198 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 248  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44687909 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44687959  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 45095432 - 45095461
Alignment:
Q  219 tttagtccatgactcaacaactccatactc 248  Q
    ||||||||||||||||||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactc 45095461  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 43986172 - 43986205
Alignment:
Q  215 tcaatttagtccatgactcaacaactccatactc 248  Q
    ||||||||||||||||||||||||||||||||||    
T  43986172 tcaatttagtccatgactcaacaactccatactc 43986205  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 248
Target Start/End: Original strand, 43983365 - 43983396
Alignment:
Q  217 aatttagtccatgactcaacaactccatactc 248  Q
    ||||||||||||||||||||||||||||||||    
T  43983365 aatttagtccatgactcaacaactccatactc 43983396  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 44004750 - 44004797
Alignment:
Q  201 ctgagggaagattgtcaatttagtccatgactcaacaactccatactc 248  Q
    |||||||| |||  |||||||||||||||||||| |||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactc 44004797  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 19567332 - 19567370
Alignment:
Q  210 gattgtcaatttagtccatgactcaacaactccatactc 248  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  19567332 gattgtcaatatagtccatgactcagcaactccatactc 19567370  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 42694667 - 42694632
Alignment:
Q  2 tttaccattgcggcgataccagactctcatggtaaa 37  Q
    ||||||||||||| ||||||||||||||||||||||    
T  42694667 tttaccattgcggtgataccagactctcatggtaaa 42694632  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 41688793 - 41688826
Alignment:
Q  215 tcaatttagtccatgactcaacaactccatactc 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  41688793 tcaatttagtccatgactcaacaactctatactc 41688826  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 24002413 - 24002368
Alignment:
Q  202 tgagggaagattgtcaatttagtccatgactcaacaactccatact 247  Q
    ||||||| |||| ||||||| |||||||||||||||||||| ||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtact 24002368  T

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