View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_283 (Length: 251)
Name: NF10829A_low_283
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_283 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 13608278 - 13608167
Alignment:
| Q |
14 |
tcacaaacacatcatatttccatttcatcctcctaggtgaagagacagtttggatgctactacaagccattgaaattgtaaaggccagaactaacttgct |
113 |
Q |
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| T |
13608278 |
tcacaaacacatcatatttccatttcatcctcctagatgaagagacagtttggatgctactactagccattgaaattgtaaaagccaaaactaacttgct |
13608179 |
T |
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| Q |
114 |
aaggatgatgta |
125 |
Q |
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|||||||||||| |
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| T |
13608178 |
aaggatgatgta |
13608167 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 31244256 - 31244134
Alignment:
| Q |
14 |
tcacaaacacatcatatttccatttcatcctcctaggtgaagagacagtttggatgctactacaagc------cattgaaattgtaaaggccagaactaa |
107 |
Q |
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||||||||||||||||||||||||||| || |||||||||||| | || |||||||| ||||||| ||||| ||||||||| |||| |||||| |
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| T |
31244256 |
tcacaaacacatcatatttccatttca---tcttaggtgaagagatacttcggatgctattacaagccattgtcattgcaattgtaaaagccaaaactaa |
31244160 |
T |
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| Q |
108 |
cttgctaaggatgatgtattttgcac |
133 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
31244159 |
cttgctgaggatgatgtattttgcac |
31244134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 6473371 - 6473446
Alignment:
| Q |
14 |
tcacaaacacatcatatttccatttcatcctcctaggtgaagagacagtttggatgctactacaagccattgaaattgt |
92 |
Q |
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| T |
6473371 |
tcacaaacacatcatatttccatttc---ctcctatttgaagagacactttggatgctactacgagtcattcaaattgt |
6473446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 17599891 - 17599954
Alignment:
| Q |
49 |
ggtgaagagacagtttggatgctactacaagccattgaaattgtaaaggccagaactaacttgc |
112 |
Q |
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| T |
17599891 |
ggtgaagagacactttggatgctactactagccattgatattataaaagccaaagctaacttgc |
17599954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 14723959 - 14723896
Alignment:
| Q |
49 |
ggtgaagagacagtttggatgctactacaagccattgaaattgtaaaggccagaactaacttgc |
112 |
Q |
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|||||||||||| |||||||||||||| ||||||||| ||| |||| |||| | ||||||||| |
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| T |
14723959 |
ggtgaagagacactttggatgctactattagccattgatattataaaagccaaagctaacttgc |
14723896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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