View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_284 (Length: 251)

Name: NF10829A_low_284
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_284
NF10829A_low_284
[»] chr4 (17 HSPs)
chr4 (106-238)||(40390972-40391104)
chr4 (10-109)||(40391556-40391655)
chr4 (104-225)||(38377891-38378011)
chr4 (125-232)||(784061-784168)
chr4 (10-109)||(40380215-40380314)
chr4 (106-239)||(15025860-15025991)
chr4 (133-235)||(11672485-11672586)
chr4 (106-230)||(48282800-48282920)
chr4 (127-196)||(15882103-15882172)
chr4 (127-191)||(10574064-10574128)
chr4 (106-241)||(6449624-6449758)
chr4 (106-197)||(23410332-23410424)
chr4 (106-241)||(33610024-33610159)
chr4 (127-196)||(52123652-52123721)
chr4 (138-241)||(31049959-31050063)
chr4 (152-241)||(20403238-20403328)
chr4 (106-182)||(35414570-35414646)
[»] chr8 (18 HSPs)
chr8 (108-239)||(12596936-12597067)
chr8 (106-241)||(10467436-10467572)
chr8 (124-237)||(32797017-32797130)
chr8 (123-241)||(39344663-39344781)
chr8 (106-229)||(26938819-26938941)
chr8 (127-241)||(33038295-33038408)
chr8 (123-239)||(17219673-17219790)
chr8 (127-193)||(17153669-17153735)
chr8 (106-233)||(8026105-8026231)
chr8 (124-199)||(42023957-42024032)
chr8 (124-228)||(33695214-33695318)
chr8 (126-213)||(16483876-16483963)
chr8 (127-193)||(17156948-17157014)
chr8 (145-234)||(24916031-24916119)
chr8 (106-180)||(35054983-35055057)
chr8 (127-164)||(17143142-17143179)
chr8 (137-230)||(24292165-24292257)
chr8 (157-241)||(2414964-2415047)
[»] chr5 (19 HSPs)
chr5 (106-239)||(16089767-16089900)
chr5 (106-241)||(36235834-36235969)
chr5 (106-239)||(15070000-15070134)
chr5 (106-239)||(19343634-19343767)
chr5 (106-241)||(5459091-5459225)
chr5 (104-199)||(1298817-1298911)
chr5 (106-236)||(26724196-26724327)
chr5 (125-212)||(38948632-38948719)
chr5 (187-242)||(35270751-35270806)
chr5 (143-205)||(6502283-6502345)
chr5 (124-241)||(38607376-38607494)
chr5 (152-241)||(14820414-14820503)
chr5 (144-241)||(34784025-34784121)
chr5 (125-232)||(30403539-30403647)
chr5 (207-238)||(26188812-26188843)
chr5 (143-198)||(34005654-34005709)
chr5 (174-241)||(39058478-39058545)
chr5 (114-171)||(39057143-39057200)
chr5 (145-237)||(5159469-5159561)
[»] chr3 (15 HSPs)
chr3 (106-239)||(44446805-44446938)
chr3 (106-241)||(28769459-28769594)
chr3 (104-199)||(50334584-50334679)
chr3 (106-239)||(34359413-34359546)
chr3 (106-241)||(20314968-20315101)
chr3 (124-241)||(38673254-38673372)
chr3 (125-239)||(44648123-44648235)
chr3 (106-213)||(52423102-52423210)
chr3 (125-239)||(39340853-39340965)
chr3 (133-237)||(17268915-17269020)
chr3 (122-193)||(41544534-41544605)
chr3 (176-241)||(2382870-2382936)
chr3 (160-234)||(45743817-45743891)
chr3 (187-241)||(16876464-16876518)
chr3 (106-171)||(20336927-20336992)
[»] chr6 (14 HSPs)
chr6 (105-239)||(17957112-17957246)
chr6 (106-229)||(17157991-17158114)
chr6 (106-233)||(6197898-6198025)
chr6 (133-233)||(10313395-10313495)
chr6 (106-241)||(24672350-24672483)
chr6 (124-239)||(4254508-4254623)
chr6 (106-226)||(4408948-4409058)
chr6 (159-240)||(34187124-34187205)
chr6 (123-241)||(30465127-30465245)
chr6 (119-210)||(12611904-12611994)
chr6 (167-241)||(10516584-10516657)
chr6 (106-213)||(5644646-5644753)
chr6 (181-239)||(2538638-2538695)
chr6 (106-164)||(12338950-12339008)
[»] chr7 (16 HSPs)
chr7 (105-239)||(20132136-20132270)
chr7 (125-233)||(28098618-28098727)
chr7 (106-241)||(13009317-13009453)
chr7 (129-239)||(11297840-11297951)
chr7 (106-241)||(27567617-27567754)
chr7 (126-199)||(34471348-34471421)
chr7 (127-213)||(48696447-48696532)
chr7 (106-241)||(30851589-30851724)
chr7 (145-241)||(25067732-25067828)
chr7 (118-237)||(33991899-33992019)
chr7 (151-199)||(39596738-39596786)
chr7 (106-164)||(22485125-22485182)
chr7 (126-239)||(25411518-25411631)
chr7 (145-221)||(12925313-12925389)
chr7 (123-241)||(28565019-28565129)
chr7 (176-241)||(40751654-40751719)
[»] chr1 (9 HSPs)
chr1 (106-241)||(33752913-33753048)
chr1 (110-239)||(20986010-20986141)
chr1 (106-193)||(29307555-29307642)
chr1 (127-239)||(13392892-13393006)
chr1 (106-239)||(16545363-16545495)
chr1 (150-230)||(37470903-37470983)
chr1 (106-193)||(29102970-29103057)
chr1 (106-164)||(23230836-23230894)
chr1 (107-172)||(35218150-35218215)
[»] chr2 (13 HSPs)
chr2 (106-243)||(35954302-35954440)
chr2 (134-241)||(34904091-34904198)
chr2 (124-241)||(8794653-8794770)
chr2 (119-241)||(10077684-10077808)
chr2 (106-239)||(39293064-39293196)
chr2 (125-241)||(6191170-6191285)
chr2 (124-239)||(30640995-30641111)
chr2 (114-241)||(31994684-31994811)
chr2 (125-239)||(24490520-24490638)
chr2 (139-238)||(855648-855752)
chr2 (106-238)||(29242513-29242646)
chr2 (114-213)||(27694475-27694574)
chr2 (144-231)||(434511-434598)
[»] scaffold0233 (1 HSPs)
scaffold0233 (124-229)||(16894-16999)
[»] scaffold0020 (1 HSPs)
scaffold0020 (124-241)||(152141-152258)
[»] scaffold0005 (1 HSPs)
scaffold0005 (104-239)||(253697-253831)
[»] scaffold0036 (1 HSPs)
scaffold0036 (125-241)||(48396-48514)
[»] scaffold0478 (1 HSPs)
scaffold0478 (127-193)||(3352-3418)
[»] scaffold1911 (1 HSPs)
scaffold1911 (127-193)||(113-179)
[»] scaffold0720 (2 HSPs)
scaffold0720 (124-239)||(5440-5551)
scaffold0720 (118-155)||(7458-7495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (145-221)||(363064-363140)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 40391104 - 40390972
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40391104 tttagtccctacaaattttttattcacttttagtccctatttgcattttatagggactattttggagaactaaaagtattcattttttgtaaaatgtttt 40391005  T
Q  206 aaaaatagagattattcttacaaactacaatat 238  Q
    ||||||||||| |||||||||||||||||||||    
T  40391004 aaaaatagagactattcttacaaactacaatat 40390972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 40391655 - 40391556
Alignment:
Q  10 tgagcattgtaagaggatttggtaatcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 109  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||  || |||||||||||||||||||||    
T  40391655 tgagcgttgtaagaggatttggtaatcagtaaaatgaggagtaaaaaaattgagataataatgtgataattcaatagatagatgtatataattcaattta 40391556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 38378011 - 38377891
Alignment:
Q  104 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtt 203  Q
    |||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||| |||    
T  38378011 aatttagtcctta-aaattttttattcacttttattccctatttgcattttatagggactattttggaggactaaaagtgttcattttttataaaaagtt 38377913  T
Q  204 ttaaaaatagagattattctta 225  Q
    || ||||||| || ||||||||    
T  38377912 tttaaaatagggactattctta 38377891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 784061 - 784168
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 224  Q
    |||||||||||||||  |||||| ||||||||| |||||| ||||||  ||||||| ||| |||||||||||||| ||||| ||||||| ||||||| ||    
T  784061 ttattcacttttagtttctattttcattttatacggactattttggatgactaaaaatatccattttttgtaaaaagttttcaaaatagggattattttt 784160  T
Q  225 acaaacta 232  Q
    | ||||||    
T  784161 agaaacta 784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 40380314 - 40380215
Alignment:
Q  10 tgagcattgtaagaggatttggtaatcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 109  Q
    ||||| |||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||| |||||||||||||   ||||||| |||| ||||||||||    
T  40380314 tgagcgttgtaagaggatttggtaatcagtaaagtgaagagtaaaaaaagtgagattatattgtgataattcaataaagagatgaatatgattcaattta 40380215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 15025991 - 15025860
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||   |||||||| |||||||||||||||  |||||||| |||||| ||||||| ||| ||||||| || ||||||||||| |||||    
T  15025991 tttagtccctacaaaaattttattcatttttagtccctatttatattttataaggactattttggaggact-aaagtataca-tttttgtaaaaagtttt 15025894  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
     ||||||| || |||| | |||||||| ||||||    
T  15025893 caaaatagggactattatcacaaactataatatt 15025860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 11672485 - 11672586
Alignment:
Q  133 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaacta 232  Q
    ||||||||  |||||  ||||||||||||||| |||| || ||||||||||| || |||||||||  | |||| |||||||||| |||||||||||||||    
T  11672485 ttttagtctttatttatattttatagggactattttgcaggactaaaagtataca-tttttgtaatttttttttaaaatagagactattcttacaaacta 11672583  T
Q  233 caa 235  Q
    |||    
T  11672584 caa 11672586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 48282920 - 48282800
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||  |||||||||||||||||||    || |||||||||| ||||| ||| ||| ||||||| |||  ||||||||||||| |||||    
T  48282920 tttagtccctacaaaaaatttattcacttttagtcc---attacattttatagagactattttagaggactaaaaatatctattttttgtaaaa-gtttt 48282825  T
Q  206 aaaaatagagattattcttacaaac 230  Q
      ||||| ||| |||||||||||||    
T  48282824 ttaaataaagactattcttacaaac 48282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 15882103 - 15882172
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgta 196  Q
    |||||||||||||||||||||| |||||| ||||||||  |||||| ||||||| ||| |||||||||||    
T  15882103 attcacttttagtccctatttgtattttagagggactatcttggaggactaaaactatccattttttgta 15882172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 10574128 - 10574064
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttt 191  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||||    
T  10574128 attcacctttagtccctatttgcattttacagggactattttggaggactaaaaatatccatttt 10574064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 6449624 - 6449758
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||| ||||||  ||||||||||||||||||  |||||| |||| |||  ||||| |||| |  ||||||||| | ||| ||||| |||| |||||    
T  6449624 tttagtccttacaaaaaatttattcacttttagtcgatatttgtattt-ataaagactattttgaaagactaaaagtgtccatcttttgcaaaaagtttt 6449722  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     ||||||| || |||| |||||||||||| ||||||    
T  6449723 taaaatagggactatttttacaaactacattattat 6449758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 23410332 - 23410424
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattt-tatagggactagtttggagaactaaaagtattcattttttgtaa 197  Q
    |||||||||||||||  || |||||||||||| ||  ||||||||||| |||| | |||| ||||||| |||||||||||  |||||||||||    
T  23410332 tttagtccctacaaaaaatatattcacttttattctttatttgcatttatatatgaactattttggaggactaaaagtatatattttttgtaa 23410424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 33610159 - 33610024
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||| ||||| ||| | ||||| |||||||||| | |||||| || ||||  |||||| ||  ||| |||||| |||  ||||||||| |||| |||||    
T  33610159 tttagaccctataaaatttttatccacttttagttcttatttggatattatttggactatttcagaggactaaacgtagacattttttgcaaaaagtttt 33610060  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     ||||||  || |||||||| |||||||||||||||    
T  33610059 caaaataaggactattcttataaactacaatattat 33610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 52123652 - 52123721
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgta 196  Q
    ||||||||||| |  ||||||| ||||||||| ||||| ||||||| ||||||||||| ||| |||||||    
T  52123652 attcacttttaatatctatttgtattttatagagactattttggaggactaaaagtatccatattttgta 52123721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 31049959 - 31050063
Alignment:
Q  138 gtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattcttacaaactacaat 236  Q
    |||| ||||| ||||| |||| ||||| ||||||||||||||| | | || |||||||||||| ||||| ||||||  || |||  |||||| |||||||    
T  31049959 gtccatatttacatttcatagagactattttggagaactaaaaatgtccatttttttgtaaaaggttttcaaaataatgactatctttacaagctacaat 31050058  T
Q  237 attat 241  Q
    |||||    
T  31050059 attat 31050063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 20403328 - 20403238
Alignment:
Q  152 tttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    ||||||||||||| | ||||| | ||||| ||| |||||||| |||||| ||||| | | ||| || ||||||||||||||| ||||||||    
T  20403328 tttatagggactattgtggaggaataaaaatatccatttttttgtaaaaagtttttagattagggactattcttacaaactataatattat 20403238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 35414646 - 35414570
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagt 182  Q
    |||||||| || ||||| || ||||| ||||||||  ||||| ||||||||||||||||  ||| || |||||||||    
T  35414646 tttagtccatataaatttttgattcatttttagtctatatttacattttatagggactatgttgaaggactaaaagt 35414570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 12597067 - 12596936
Alignment:
Q  108 tagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaa 207  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||| |    
T  12597067 tagtccctacaaattttttattcacgtttagtccctatttgcattttatagggactattttggaggactaaatatatccattttttgtaaaatgttttca 12596968  T
Q  208 aaatagagattattcttacaaactacaatatt 239  Q
    ||||||||| || | |||||||||||||||||    
T  12596967 aaatagagactaattttacaaactacaatatt 12596936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 10467436 - 10467572
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 204  Q
    |||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| | || |||||||||||| ||||    
T  10467436 tttagtccttacaaaaaatttattcatttttagtccctatttgcattttatagggactattttggaggactaaaagtgtccatttttttgtaaaaagttt 10467535  T
Q  205 taaaaatagagattattcttacaaactacaatattat 241  Q
    | ||||||| || |||||||||||  |||||||||||    
T  10467536 tcaaaatagggactattcttacaagttacaatattat 10467572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 32797130 - 32797017
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||| || ||||||||  ||||||||||||| ||||| ||||||  || ||||||    
T  32797130 tttattcacttttagtccctaattgcattttataaggactattttggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattct 32797031  T
Q  224 tacaaactacaata 237  Q
    ||||||||||||||    
T  32797030 tacaaactacaata 32797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 39344781 - 39344663
Alignment:
Q  123 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 222  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| | || ||||| ||||| ||||| ||||||   | |||||    
T  39344781 atttattcacttttagtccctatttacattttatagagactattttggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattc 39344682  T
Q  223 ttacaaactacaatattat 241  Q
    |||||||||||||||||||    
T  39344681 ttacaaactacaatattat 39344663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 26938819 - 26938941
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||| | |||||| |  |||| |||||    
T  26938819 tttagtccctacaaaaaatttattcacttttagtccctatttgcattttaaagggactattttgaaggactaaaagtgtccattttat-aaaaaagtttt 26938917  T
Q  206 aaaaatagagattattcttacaaa 229  Q
     ||||||| || ||||||||||||    
T  26938918 caaaatagggactattcttacaaa 26938941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 33038408 - 33038295
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttac 226  Q
    |||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||| ||||||| ||||| |||||||  | |||||||||    
T  33038408 attcgcttttagtccctatttgaattttatagggactatcttg-agaactaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttac 33038310  T
Q  227 aaactacaatattat 241  Q
    ||||| |||||||||    
T  33038309 aaactgcaatattat 33038295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 17219673 - 17219790
Alignment:
Q  123 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattatt 221  Q
    |||||||||||||||||||||||||||| | || |||||||| ||||||| ||||||| ||| || ||||||||| || ||||| ||||||| || ||||    
T  17219673 atttattcacttttagtccctatttgcactgtaaagggactattttggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatt 17219772  T
Q  222 cttacaaactacaatatt 239  Q
     |||||||||| ||||||    
T  17219773 tttacaaactaaaatatt 17219790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 17153735 - 17153669
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  17153735 attcacttttagtccctatttgcattttagagggactatcttggaggactaaaagtatccatttttt 17153669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 8026231 - 8026105
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaa-atgttt 204  Q
    ||||||||||| |||  ||||||||||||||| ||  |||||||||||||||||||||  ||||||| ||||||||| |  |||||| |||||  | |||    
T  8026231 tttagtccctataaaaaatttattcacttttactctttatttgcattttatagggact--tttggagtactaaaagtgtcaatttttcgtaaattttttt 8026134  T
Q  205 taaaaatagagattattcttacaaactac 233  Q
    | ||||||| || ||||||||||||||||    
T  8026133 ttaaaatagggactattcttacaaactac 8026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 42023957 - 42024032
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 199  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||||||| ||||||||| | ||| ||||||||||    
T  42023957 tttattcatttttagtccctatttgctttttatatggactattttggaggactaaaagtgtacatattttgtaaaa 42024032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 33695318 - 33695214
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    |||||||| ||||| ||  |||||  ||||||||| ||||| ||||||| | ||||| |||||| |||||||||||| |||| |||||| ||| ||||||    
T  33695318 tttattcatttttaatctttatttatattttatagagactattttggaggaataaaaatattcagtttttgtaaaatcttttcaaaataaagactattct 33695219  T
Q  224 tacaa 228  Q
    |||||    
T  33695218 tacaa 33695214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 16483963 - 16483876
Alignment:
Q  126 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 213  Q
    |||||||||||||| ||||||||||||||| || ||||| ||||||  ||||||| ||| || ||||||| ||| ||||| |||||||    
T  16483963 tattcacttttagttcctatttgcattttacagagactattttggatgactaaaaatatccaatttttgttaaaagttttcaaaatag 16483876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 17156948 - 17157014
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    ||||||| ||||||||||||||||||||| ||||| ||  |||||| ||||||||||| ||||||||    
T  17156948 attcactcttagtccctatttgcattttaaagggattatcttggaggactaaaagtatccatttttt 17157014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 24916031 - 24916119
Alignment:
Q  145 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 234  Q
    ||||||||||||||| |||| ||||||| ||||||| ||| |||||||| ||||| ||||  ||||||| || |||| ||||||||||||    
T  24916031 tttgcattttataggaactattttggaggactaaaaatatccattttttctaaaaagtttccaaaatag-gactatttttacaaactaca 24916119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 35054983 - 35055057
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcatttt-atagggactagtttggagaactaaaa 180  Q
    |||||| ||||||||  ||||||||| ||||||||| || ||||||||| |||||||||| |||||||||||||||    
T  35054983 tttagttcctacaaaa-atttattcatttttagtccttaattgcatttttatagggactattttggagaactaaaa 35055057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 17143179 - 17143142
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggacta 164  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  17143179 attcacttttagtccctatttgcattttagagggacta 17143142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 24292165 - 24292257
Alignment:
Q  137 agtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaac 230  Q
    |||||||||||| |||||| |||||||| ||| ||| ||||||||||| |||||||| |||||   ||| ||||||| || | |||||||||||    
T  24292165 agtccctatttgtattttacagggacta-ttttgaggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaac 24292257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 2415047 - 2414964
Alignment:
Q  157 agggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    |||||||| ||||||| || |||||||| ||||||| |||||| |||||    |||| || |||||||||||||||| |||||||    
T  2415047 agggactattttggaggaccaaaagtatccattttt-gtaaaaagttttcgttatagggactattcttacaaactacgatattat 2414964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 16089900 - 16089767
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||| |||||    
T  16089900 tttagtccttacaaattttttattcacttttagtccatatttgcattttatagggactattttagaggactaaaagtacccattttttgtaaaaagtttt 16089801  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
    ||||| ||||| ||||||||||||||| ||||||    
T  16089800 aaaaacagagactattcttacaaactataatatt 16089767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 36235969 - 36235834
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||| ||||||| | ||||| |||||||||||| ||||| |||||    
T  36235969 tttagtccctacaaattttttattcatttttagtccttatttgcattttataaggactattttggaggaataaaaatattcattttttataaaaagtttt 36235870  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     ||||| | || | ||||||||||||| ||||||||    
T  36235869 taaaatggggactgttcttacaaactaaaatattat 36235834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 15070134 - 15070000
Alignment:
Q  106 tttagtccctacaaatta-tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 204  Q
    |||||||||||||||  | |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||| |||||||||||||| ||||    
T  15070134 tttagtccctacaaaaaaatttattcacttttagtccctatttacattttatagagactattttgaaggactaaaaatatccattttttgtaaaaagttt 15070035  T
Q  205 taaaaatagagattattcttacaaactacaatatt 239  Q
    | ||||| |||| |||| |||||||||||||||||    
T  15070034 tcaaaatcgagactattattacaaactacaatatt 15070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 19343767 - 19343634
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||  ||||||||||||| |||||    
T  19343767 tttaggccctgcaaaaaatttattcacttttagtccctatttgcattttataaggactagtttggaggactaaaattatctattttttgtaaaaagtttt 19343668  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
     ||||||   | |||| |||||||||||||||||    
T  19343667 taaaatatgaactatttttacaaactacaatatt 19343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 5459091 - 5459225
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||  |||     
T  5459091 tttagtccctacaatttttttattcatttttaatccctatttgcattttatagggactattttggaggaataaaagtattcattttttgtagaaaattta 5459190  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
    |||||||| ||  ||||||| |||||| ||||||||    
T  5459191 aaaaataggga-cattcttataaactataatattat 5459225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 1298911 - 1298817
Alignment:
Q  104 aatttagtccctacaaatta--tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 199  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||||||||||||||||||||||    
T  1298911 aatttagtccctacaaaaaaaatttattcacttttagtccctatttgcattttatagggactattttagag---taaaagtattcattttttgtaaaa 1298817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 26724327 - 26724196
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 204  Q
    ||||| ||||| |||  |||||||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| ||||    
T  26724327 tttagcccctataaaaaatttattcacttttagtctctattttcattttataaggactattttggaggactaaaagtatccatttttttgtaaaaagttt 26724228  T
Q  205 taaaaatagagattattcttacaaactacaat 236  Q
    | ||||||| || | |||||| ||| ||||||    
T  26724227 tcaaaatagggactgttcttataaattacaat 26724196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 38948719 - 38948632
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaata 212  Q
    |||||||||||| ||||||||||| ||||||||||||||| || || | ||||||||| | |||||||||||||| ||||| ||||||    
T  38948719 ttattcacttttggtccctatttgaattttatagggactatttgggtggactaaaagtgtccattttttgtaaaaagtttttaaaata 38948632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 35270806 - 35270751
Alignment:
Q  187 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattatt 242  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  35270806 attttttgttaaaagttttcaaaatagagattattcttacaaactacaagattatt 35270751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6502345 - 6502283
Alignment:
Q  143 tatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| || ||||||||||| |||||    
T  6502345 tatttacattttatagggactattttggaggactaaaagtatccaatttttgtaaaaagtttt 6502283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 38607494 - 38607376
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattc 222  Q
    |||||| |||||||||||| ||||||||||||||| ||||| |||| |  ||||||| |||  ||||||| |||| | ||||| ||||||  || |||||    
T  38607494 tttatttacttttagtcccgatttgcattttatagagactattttgaaagactaaaaatatatattttttggtaacaagttttcaaaataaggactattc 38607395  T
Q  223 ttacaaactacaatattat 241  Q
    | | |||||||||||||||    
T  38607394 taaaaaactacaatattat 38607376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 14820414 - 14820503
Alignment:
Q  152 tttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    |||||| |||||| |||| || |||||||||   |||||||| ||||| ||||| ||||||  ||||||| |||||||||||| ||||||    
T  14820414 tttataaggactattttgaaggactaaaagtgaccattttttataaaaagtttttaaaatatggattatttttacaaactacattattat 14820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 34784121 - 34784025
Alignment:
Q  144 atttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    ||||| |||||||||| |||| |||| || |||||||||||| |||||||  |||| ||||| |||||| ||| |||||| | ||| |||||||||||    
T  34784121 atttgtattttataggaactattttgaaggactaaaagtatt-attttttagaaaaagttttcaaaataaagaatattctaataaattacaatattat 34784025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 30403539 - 30403647
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatag-ggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    |||||||||||||||   ||||| ||| |||||  |||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||  || ||||||    
T  30403539 ttattcacttttagtttatatttacatgttataaaggactattttggagtactaaatgtgcccattttttgtaaaaagtttttaaaataatgactattct 30403638  T
Q  224 tacaaacta 232  Q
    |||||||||    
T  30403639 tacaaacta 30403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 26188812 - 26188843
Alignment:
Q  207 aaaatagagattattcttacaaactacaatat 238  Q
    ||||||||||||||||||||||||||||||||    
T  26188812 aaaatagagattattcttacaaactacaatat 26188843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 34005654 - 34005709
Alignment:
Q  143 tatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaa 198  Q
    |||||||||||||||||||||| |||  || ||||||| ||| |||||||||||||    
T  34005654 tatttgcattttatagggactattttaaaggactaaaaatatacattttttgtaaa 34005709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 39058478 - 39058545
Alignment:
Q  174 actaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    ||||||||| | |||| ||||||||| ||||| ||||||  || ||||||||||||||||||| ||||    
T  39058478 actaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaatgttat 39058545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 39057143 - 39057200
Alignment:
Q  114 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 171  Q
    |||||||  ||||||||||||||| ||| ||||| |||||||| ||||||| ||||||    
T  39057143 ctacaaaaaatttattcacttttaatccttatttacattttattgggactattttgga 39057200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 5159469 - 5159561
Alignment:
Q  145 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaata 237  Q
    ||||||||||||||  | || ||||||| |||| |||||| |||||||||| ||| ||||| ||||||  || |||| ||| |||||| ||||    
T  5159469 tttgcattttatagatattattttggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataata 5159561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 44446805 - 44446938
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||| |||||    
T  44446805 tttagttcttacaaaatttttattcacttttagtccctatttgcattttatagggactattttggaggactaaaagtacacattttttgtaaaaagtttt 44446904  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
     |||| ||||| ||||||||||||||| ||||||    
T  44446905 caaaacagagactattcttacaaactataatatt 44446938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 28769459 - 28769594
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||||||||||| |||||| ||||||| | |||||||||  ||||| ||||||| |||||    
T  28769459 tttaatccctataaaaaatttattcacttttagtccttatttgcattttataaggactattttggaggattaaaagtatcaattttctgtaaaaagtttt 28769558  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     |||||| ||| ||||||||||||||||||||||||    
T  28769559 taaaataaagactattcttacaaactacaatattat 28769594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 50334584 - 50334679
Alignment:
Q  104 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 199  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||    
T  50334584 aatttagtccctacaaaaaatttattcacttttagttcctatttgcattttatagggactattttagaggactaaaaatatccattttttgtaaaa 50334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 34359546 - 34359413
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||   |||||||||||||| | ||||||| |||||||||||||||  |||| || ||||||| ||| |||||||||||||| |||||    
T  34359546 tttagtccctacaaaaattttattcacttttaattcctatttacattttatagggacttttttgaaggactaaaattatccattttttgtaaaaagtttt 34359447  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
     |||| || ||  ||| |||||||||| ||||||    
T  34359446 caaaacagggaccatttttacaaactataatatt 34359413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 20315101 - 20314968
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||||| ||| |||  ||||||||||||||||||||||||| |||||||||||||| | ||||||| |||  ||| ||  |||||||||||||  ||||    
T  20315101 tttagtctctataaaaaatttattcacttttagtccctatttacattttatagggacaattttggagtact--aagcataaattttttgtaaaaaatttt 20315004  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     |||||||||| |||| ||||||| | |||||||||    
T  20315003 caaaatagagactattattacaaaattcaatattat 20314968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 38673254 - 38673372
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtat-tcattttttgtaaaatgttttaaaaatagagattattc 222  Q
    ||||||||||||||||| ||| ||  ||||||| ||||||| ||||||| ||||||||||| |  |||||||||||| |||||| ||| ||  | |||||    
T  38673254 tttattcacttttagtctctacttatattttatggggactattttggaggactaaaagtatctatttttttgtaaaaggttttacaaacagtaaatattc 38673353  T
Q  223 ttacaaactacaatattat 241  Q
    ||||||| |||||||||||    
T  38673354 ttacaaattacaatattat 38673372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 44648235 - 44648123
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 224  Q
    |||||||||||||||| ||||||| | ||||||||||||| ||| ||| |||||||||||  |  |||||||||| ||||| ||||||  |  ||| |||    
T  44648235 ttattcacttttagtctctatttgaactttatagggactatttttgaggactaaaagtatcaa--ttttgtaaaaagttttcaaaataaggtctatactt 44648138  T
Q  225 acaaactacaatatt 239  Q
    |||||||||||||||    
T  44648137 acaaactacaatatt 44648123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 52423210 - 52423102
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaact-aaaagtattcattttttgtaaaatgttt 204  Q
    |||| |||||| |||  ||||||| |||||||| ||||||||||||||||||||| |||  |||||| ||| |||||||| |||||||  ||||| ||||    
T  52423210 tttaatccctataaaaaatttatttacttttagcccctatttgcattttataggggctatattggaggactaaaaagtatccatttttaataaaaagttt 52423111  T
Q  205 taaaaatag 213  Q
    | |||||||    
T  52423110 tcaaaatag 52423102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 39340965 - 39340853
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 224  Q
    ||||||||||||| |  |||||| |||||||||  ||||| ||||||| ||||||||||  ||||||||||||||   ||  ||||||| || |||| ||    
T  39340965 ttattcacttttactttctattttcattttataatgactattttggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactattttt 39340868  T
Q  225 acaaactacaatatt 239  Q
    |||||||||||||||    
T  39340867 acaaactacaatatt 39340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 17269020 - 17268915
Alignment:
Q  133 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttg-taaaatgttttaaaaatagagattattcttacaaact 231  Q
    ||||| || |||||| ||||||||| ||| || |||  |||| ||||||||||||||||||  ||||||||||  |||||| ||| |||| |||||||||    
T  17269020 ttttaatctctattttcattttatatggattattttttagaattaaaagtattcatttttttataaaatgtttataaaatatagactatttttacaaact 17268921  T
Q  232 acaata 237  Q
    ||||||    
T  17268920 acaata 17268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 41544534 - 41544605
Alignment:
Q  122 tatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    |||||||||||||||||||||||| ||||||||| ||| |||| ||||||  | ||||||| | ||||||||    
T  41544534 tatttattcacttttagtccctatatgcattttacaggaactattttggaagattaaaagtgtccatttttt 41544605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 2382870 - 2382936
Alignment:
Q  176 taaaagtattcattttttgtaaaatgttttaaaaatagagatta-ttcttacaaactacaatattat 241  Q
    |||||||||||||||||||||||| ||||| |||||||||| || |||| ||||||| |||| ||||    
T  2382870 taaaagtattcattttttgtaaaaagttttcaaaatagagaatatttctcacaaactgcaattttat 2382936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 45743891 - 45743817
Alignment:
Q  160 gactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 234  Q
    ||||| ||||||| || |||||| | |||||||||||||| ||||| ||||||| ||  ||||||||||||||||    
T  45743891 gactattttggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaactaca 45743817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 16876518 - 16876464
Alignment:
Q  187 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    |||||||||||  | |||| ||||||| || ||||||||||||||||||||||||    
T  16876518 attttttgtaatttttttttaaaatagggactattcttacaaactacaatattat 16876464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 20336992 - 20336927
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 171  Q
    ||||| ||||| |||  ||||||||||||||||| |||||||  ||||||||||||| | ||||||    
T  20336992 tttagcccctataaaaaatttattcacttttagttcctatttatattttatagggacaattttgga 20336927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 17957246 - 17957112
Alignment:
Q  105 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 204  Q
    ||||||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||    
T  17957246 atttagtccttataaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 17957147  T
Q  205 taaaaatagagattattcttacaaactacaatatt 239  Q
    | |||| ||||| ||||||||||||||| ||||||    
T  17957146 tcaaaacagagactattcttacaaactataatatt 17957112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 17157991 - 17158114
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||  | ||||||||||||||||||||||||||| |||||| ||||| ||| ||| |||| |||||| |||||||||||||| |||||    
T  17157991 tttagtccctacaaaaaaattattcacttttagtccctatttgcatcttatagagactacttttgaggactacaagtatccattttttgtaaaaagtttt 17158090  T
Q  206 aaaaatagagattattcttacaaa 229  Q
     |||||||||||||||||||||||    
T  17158091 caaaatagagattattcttacaaa 17158114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 6198025 - 6197898
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||| ||   ||||||||||||| |||| ||||| |||||||||||||||| ||||||| | ||||||| | |||||||| ||||| |||||    
T  6198025 tttagtccctacgaaaagtttattcacttttggtccttatttacattttatagggactattttggaggaataaaagtgtccattttttctaaaaagtttt 6197926  T
Q  206 aaaaatagagattattcttacaaactac 233  Q
     |||||||||| ||||||||||||||||    
T  6197925 caaaatagagactattcttacaaactac 6197898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 10313495 - 10313395
Alignment:
Q  133 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaacta 232  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |  ||||| | | |||| |||| || |||| || |||||||||||||||    
T  10313495 ttttagtccttatttgcattttatagggactattttggaggactaaaagtgtatattttcttttaaatattttcaatatagggactattcttacaaacta 10313396  T
Q  233 c 233  Q
    |    
T  10313395 c 10313395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 24672483 - 24672350
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||   |||||||||| || |||||||||||||| ||| | |||||| ||||||| ||||||| |||   |||||| | ||  |||||    
T  24672483 tttagtccctacaaaaattttattcactattggtccctatttgcatcttaaatggactattttggaggactaaaaatatctttttttttttaa--gtttt 24672386  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     |||||||||| |||| ||||||| |||||||||||    
T  24672385 taaaatagagactattattacaaattacaatattat 24672350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 4254508 - 4254623
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    |||||| ||||||| ||| ||||| ||||||| | |||||| |||||||   ||||||| | |||||||||||||  ||||| ||||||| ||||||| |    
T  4254508 tttatttacttttaatccttattttcattttacaaggactattttggagggttaaaagtgtccattttttgtaaacagtttttaaaatagggattatttt 4254607  T
Q  224 tacaaactacaatatt 239  Q
    ||||||||||| ||||    
T  4254608 tacaaactacagtatt 4254623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 4408948 - 4409058
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||| ||| |||||| | |||||||||||||||| ||||||| |||||||||||||||| |||||| ||||          ||||||||||||| |||||    
T  4408948 tttaatccttacaaaatttttattcacttttagttcctatttacattttatagggactattttggaaaact----------attttttgtaaaaagtttt 4409037  T
Q  206 aaaaatagagattattcttac 226  Q
     |||||||||| |||||||||    
T  4409038 caaaatagagactattcttac 4409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 34187205 - 34187124
Alignment:
Q  159 ggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatta 240  Q
    |||||| |||| || || ||||||||||||||||| ||| | ||||| |||||||||| ||||||||| |||||||||||||    
T  34187205 ggactattttgaaggaccaaaagtattcattttttttaacaagttttcaaaatagagactattcttacgaactacaatatta 34187124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 30465127 - 30465245
Alignment:
Q  123 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 222  Q
    ||||||||||| |||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  |||| ||||||| || |||||    
T  30465127 atttattcactcttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttttaaaatagggactattc 30465226  T
Q  223 ttacaaactacaatattat 241  Q
    ||||||||| |||||||||    
T  30465227 ttacaaacttcaatattat 30465245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 12611994 - 12611904
Alignment:
Q  119 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaa 210  Q
    |||| |||||||||||||||| | ||||| |||||||||| ||||| ||||| | || |||| |||| ||||||||||||| | ||||||||    
T  12611994 aattttttattcacttttagttc-tattttcattttatagtgactattttggtggacaaaaaatattaattttttgtaaaaagatttaaaaa 12611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 10516584 - 10516657
Alignment:
Q  167 ttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    |||||| ||||||||||| ||| |||||||||| ||| | ||| ||| || ||||||||||||||||||||||||    
T  10516584 ttggaggactaaaagtatccatattttgtaaaaagttattaaa-tagggactattcttacaaactacaatattat 10516657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 5644646 - 5644753
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||||| ||| |||  ||||||||||| |||||||||| || ||| ||||||  |||| ||||||| ||||||| |||   |||||||| ||| |||||    
T  5644646 tttagtctctataaaacatttattcactcttagtccctacttacatcttatagacactattttggaggactaaaattataatttttttgtcaaaagtttt 5644745  T
Q  206 aaaaatag 213  Q
     |||||||    
T  5644746 taaaatag 5644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 2538695 - 2538638
Alignment:
Q  181 gtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 239  Q
    |||||||||||||||||| | |||||||| ||| ||| |||||||||||||| ||||||    
T  2538695 gtattcattttttgtaaatttttttaaaa-tagggatcattcttacaaactataatatt 2538638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 12339008 - 12338950
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 164  Q
    ||||||| ||||||||| |||||||||||||||||  | |||| ||||||||| |||||    
T  12339008 tttagtcgctacaaattttttattcacttttagtctttgtttgtattttatagagacta 12338950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 20132270 - 20132136
Alignment:
Q  105 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 204  Q
    ||||||| | |||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||    
T  20132270 atttagttcttacaaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 20132171  T
Q  205 taaaaatagagattattcttacaaactacaatatt 239  Q
    | |||| ||||| |||||||||||| || ||||||    
T  20132170 tcaaaacagagactattcttacaaattataatatt 20132136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 28098727 - 28098618
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgt-aaaatgttttaaaaatagagattattct 223  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||| ||||| ||||||  |||||||      
T  28098727 ttatttacttttagtccctatttgcattttatagggactattttggaggactaaaaatattcattttttgtaaaaaagttttcaaaatatggattatttc 28098628  T
Q  224 tacaaactac 233  Q
    ||||||||||    
T  28098627 tacaaactac 28098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 13009317 - 13009453
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 204  Q
    |||||||||||||||   |||||||||  ||| || |||||| ||||||| |||||||| ||||||| |||||||||||||| |||||||||||| |||     
T  13009317 tttagtccctacaaaagttttattcacaattaatctctatttacattttacagggactaatttggaggactaaaagtattcacttttttgtaaaaagtta 13009416  T
Q  205 taaaaatagagattattcttacaaactacaatattat 241  Q
    | ||||||  || ||||||||||||||||||||||||    
T  13009417 ttaaaataacgactattcttacaaactacaatattat 13009453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 11297951 - 11297840
Alignment:
Q  129 tcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattcttaca 227  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||| ||||||||||| |||||||| ||| || ||||| ||||||| || |||| |||||    
T  11297951 tcactttttgtccctatttgtattttaaagggactattttggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttaca 11297852  T
Q  228 aactacaatatt 239  Q
    ||||| ||||||    
T  11297851 aactaaaatatt 11297840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 27567617 - 27567754
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtat--tcattttttgtaaaatgtt 203  Q
    ||||||||||| |||   ||| |||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||| |||  |  ||||||| |||| |||    
T  27567617 tttagtccctaaaaaagttttcttcacttttaatccatatttgcattttataaggactattttggaggactaaaaatatactttttttttgcaaaaagtt 27567716  T
Q  204 ttaaaaatagagattattcttacaaactacaatattat 241  Q
    || ||||||  || ||||||||||||||||||||||||    
T  27567717 ttcaaaataaggactattcttacaaactacaatattat 27567754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 34471421 - 34471348
Alignment:
Q  126 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 199  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| || |||||| |||| ||||||||||||||    
T  34471421 tattcacttttagtccctatttgcattttatagagactattttgaaggactaaaggtatacattttttgtaaaa 34471348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 48696532 - 48696447
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 213  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||| | |||| ||||| ||||| |||||||    
T  48696532 attcacttttagtccctatttgcattttatagagactattttggaggactaaaaatattc-tgttttctaaaaagtttttaaaatag 48696447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 30851589 - 30851724
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    ||||||| ||| |||  |||||||||||||||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  ||||    
T  30851589 tttagtctctataaaacatttattcacttttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttt 30851688  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     ||||||| || |||||||||||||| |||||||||    
T  30851689 taaaatagggactattcttacaaacttcaatattat 30851724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 25067828 - 25067732
Alignment:
Q  145 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    |||||||||| ||| ||||| ||||||  ||||||||||| |||||||||||||  ||||| ||||||  || |||| |||||||||| ||||||||    
T  25067828 tttgcattttctagagactattttggaagactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatattat 25067732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 33992019 - 33991899
Alignment:
Q  118 aaattatttattcacttttagtccctatttgcattttatagggactagtttggagaa-ctaaaagtattcattttttgtaaaatgttttaaaaatagaga 216  Q
    ||||| ||||||||| ||||||||||||||| |||||||| ||| || |||||||||   |||| ||||||||||||||||||    || |||||| |||    
T  33992019 aaattttttattcacgtttagtccctatttgtattttataaggaatattttggagaataaaaaaatattcattttttgtaaaaaaaattcaaaatataga 33991920  T
Q  217 ttattcttacaaactacaata 237  Q
      ||||||| |||||||||||    
T  33991919 ccattcttaaaaactacaata 33991899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 39596738 - 39596786
Alignment:
Q  151 ttttatagggactagtttggagaactaaaagtattcattttttgtaaaa 199  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  39596738 ttttatagagactattttggagaactaaaagtattcattttttgtaaaa 39596786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 22485125 - 22485182
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 164  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  22485125 tttagtccgtacaaatt-tttatttacttttagtccctatttgcattttataaggacta 22485182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 25411518 - 25411631
Alignment:
Q  126 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctta 225  Q
    ||||| ||||||||| || |||  |||||||||| |||| ||| ||||| ||||| ||| |||||||   |||| || || ||||||  || ||||||||    
T  25411518 tattctcttttagtcactgtttatattttataggaactattttagagaattaaaaatatccatttttgtaaaaaagtatttaaaatattgactattctta 25411617  T
Q  226 caaactacaatatt 239  Q
    ||||||||||||||    
T  25411618 caaactacaatatt 25411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 12925389 - 12925313
Alignment:
Q  145 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattatt 221  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||  ||||||||||||| ||||||||||||  |||||||    
T  12925389 tttgctttttataaggattattttggaggactaaaaatatctattttttgtaaaaagttttaaaaataaggattatt 12925313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 28565019 - 28565129
Alignment:
Q  123 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 222  Q
    ||||||| ||||||| | |||||||| |||||||| | |||| |||||||        ||||| ||||||||||||  ||||| |||||||||| ||||     
T  28565019 atttatttacttttaattcctatttgtattttatatgaactattttggag--------gtattaattttttgtaaagagttttcaaaatagagactattt 28565110  T
Q  223 ttacaaactacaatattat 241  Q
    ||| |||||||| ||||||    
T  28565111 ttataaactacattattat 28565129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 40751654 - 40751719
Alignment:
Q  176 taaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatattat 241  Q
    ||||| |||||| |||||||||    |||| ||||||| |||||||||||||||||| ||||||||    
T  40751654 taaaaatattcagtttttgtaatcaatttttaaaatagggattattcttacaaactaaaatattat 40751719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 33752913 - 33753048
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||| ||||||||| || |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||| |   |||    
T  33752913 tttaatccctacaatttttttattcacttttagtccttatttacattttatagggactattttggagaagtaaaagtgttcattttttgtaataaagttt 33753012  T
Q  206 aaaaatagagattattcttacaaactacaatattat 241  Q
     ||||||| ||  |||||||||||||||||||||||    
T  33753013 caaaatagtgaccattcttacaaactacaatattat 33753048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 20986141 - 20986010
Alignment:
Q  110 gtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaa 207  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||  |  |||||||||||| ||||| |    
T  20986141 gtccctacaaaaaatttatttacttttagtccttatttgcattttatagggactattttggaggactaaaagtatctattttttttgtaaaaagttttca 20986042  T
Q  208 aaatagagattattcttacaaactacaatatt 239  Q
    |||||| || ||||||| ||||||||||||||    
T  20986041 aaatagggactattcttgcaaactacaatatt 20986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 29307555 - 29307642
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||    
T  29307555 tttagtccctacaaattttttattaactcttagtccctatttgcattttatagggactattttggaggactaaatatatccatttttt 29307642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 13393006 - 13392892
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgt-aaaatgttttaaaaatagagattattctt 224  Q
    ||||||||||||||||||| || |||||||| | |||| ||||||||||||||| ||| || |||||||| |||| ||||| ||||||| || |||| ||    
T  13393006 attcacttttagtccctatatgtattttatatgaactattttggagaactaaaattatccatttttttgtaaaaaagtttttaaaatagggactattttt 13392907  T
Q  225 acaaactacaatatt 239  Q
    |||||||||||||||    
T  13392906 acaaactacaatatt 13392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 16545363 - 16545495
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||  ||||||  ||||||||||||||| | || ||||||||||| || |||||| ||||||| ||||||| ||| ||||||||||| || |||||    
T  16545363 tttagtctgtacaaaaaatttattcacttttactaccaatttgcattttgtaaggactattttggaggactaaaaatatccattttttgtataaagtttt 16545462  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
     ||||||| ||  ||| ||| |||||||||||||    
T  16545463 caaaatagggaccattttta-aaactacaatatt 16545495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 37470903 - 37470983
Alignment:
Q  150 attttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaac 230  Q
    ||||||||| ||||| ||||||| |||||||| || |||||||||||||| |||||  ||||||  | |||||||||||||    
T  37470903 attttatagagactattttggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaac 37470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 29103057 - 29102970
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    |||| ||| ||||||  ||||||||||||||||||| ||||||| ||||||||  |||| ||||||| ||||||| |||  |||||||    
T  29103057 tttaatccatacaaaaaatttattcacttttagtccttatttgctttttatagatactattttggaggactaaaaatatctatttttt 29102970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 23230836 - 23230894
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 164  Q
    ||||||||||||||| | ||||||||||||||||| |||| | ||||||||| ||||||    
T  23230836 tttagtccctacaaaatttttattcacttttagtcactatatacattttataaggacta 23230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 35218215 - 35218150
Alignment:
Q  107 ttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggag 172  Q
    ||||| |||||||| | |||||| ||||||||||  ||||| |||||||||||||||| |||||||    
T  35218215 ttagttcctacaaaatttttatttacttttagtctttatttacattttatagggactattttggag 35218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 35954440 - 35954302
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattc-attttttgtaaaatgttt 204  Q
    |||||||||||||| || ||||||||||||||||||||| ||  ||||||||||| ||| ||||||| ||||||||| ||| ||||||  ||||| | ||    
T  35954440 tttagtccctacaatttttttattcacttttagtccctagttatattttataggggctattttggaggactaaaagttttcaatttttattaaaaagatt 35954341  T
Q  205 taaaaatagagattattcttacaaactacaatattattg 243  Q
    | | |||||||| ||||||||||||||||||||||||||    
T  35954340 ttataatagagactattcttacaaactacaatattattg 35954302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 34904198 - 34904091
Alignment:
Q  134 tttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactac 233  Q
    |||||||||||||||||||||| | |||||| |||  || ||||||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||||||    
T  34904198 tttagtccctatttgcattttaaaaggactattttataggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactac 34904099  T
Q  234 aatattat 241  Q
    ||||||||    
T  34904098 aatattat 34904091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 8794770 - 8794653
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||  ||||||| | | |||||||||||||| ||||| ||||||| || ||||||    
T  8794770 tttattcacttttagtccctatttgcattttataggagctattttggatgactaaaaatgtccattttttgtaaaaagtttttaaaatagggactattct 8794671  T
Q  224 tacaaactacaatattat 241  Q
    ||| || |||||||||||    
T  8794670 tacgaattacaatattat 8794653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 10077808 - 10077684
Alignment:
Q  119 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaaaaatagaga 216  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||| ||| ||  |||||||||||| ||||| ||||||| ||    
T  10077808 aattttttattcacttttagtccatatttgtattttattgggactattttggaggactaaaaatatccattttttttgtaaaaagttttcaaaataggga 10077709  T
Q  217 ttattcttacaaactacaatattat 241  Q
     |||| |||||||||||||||||||    
T  10077708 ctattattacaaactacaatattat 10077684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 39293064 - 39293196
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 205  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||||||| |||||| ||||||| | ||||| ||| ||||||||  ||||||||||    
T  39293064 tttagtccctacaaaaaaattattcacttttagtccctattttcattttatatggactattttggaggaataaaaatatccatttttt-aaaaatgtttt 39293162  T
Q  206 aaaaatagagattattcttacaaactacaatatt 239  Q
     |||||||  | |||| ||||||| |||||||||    
T  39293163 taaaataggaactattattacaaattacaatatt 39293196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 6191285 - 6191170
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 224  Q
    ||||||||||||||| | |||||| |||||||||  |||| ||||||||||||||  |||||||||||||||||| ||||| ||||||  || |||||||    
T  6191285 ttattcacttttagttcttatttgtattttataga-actattttggagaactaaacatattcattttttgtaaaaagttttcaaaatacggactattctt 6191187  T
Q  225 acaaactacaatattat 241  Q
    ||||| |||||||||||    
T  6191186 acaaagtacaatattat 6191170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 30640995 - 30641111
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattc 222  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||| || ||||||||| || ||||| ||||||| || || |     
T  30640995 tttattcacttttagtccctatttgcattttaaagggactattttggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactactt 30641094  T
Q  223 ttacaaactacaatatt 239  Q
    |||||||||| ||||||    
T  30641095 ttacaaactaaaatatt 30641111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 31994684 - 31994811
Alignment:
Q  114 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 213  Q
    |||||||  ||||||||| ||||| |||| ||||||||||||||||||||| ||||||| | || |||| | ||||||||  |||| ||||| ||||| |    
T  31994684 ctacaaaaaatttattcatttttaatcccaatttgcattttatagggactattttggaggattacaagtgtccattttttaaaaaaagttttcaaaattg 31994783  T
Q  214 agattattcttacaaactacaatattat 241  Q
     || |||||||||||| |||||||||||    
T  31994784 ggactattcttacaaattacaatattat 31994811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 24490520 - 24490638
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgt----aaaatgttttaaaaatagagattat 220  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||||| |    ||||     | ||||||| ||||||    
T  24490520 ttattcacttttagtccctatttgcattttatagagactattttagaggactaaaagtatccattttttattaaaaaaaaaaaatcaaaatagggattat 24490619  T
Q  221 tcttacaaactacaatatt 239  Q
    |||||||||||||||||||    
T  24490620 tcttacaaactacaatatt 24490638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 855752 - 855648
Alignment:
Q  139 tccctatttgcattttatagggactagtttgg-----agaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactac 233  Q
    |||||||||||||||||||||||||| |||||     || ||||||| |||||||||||||||||| ||||| ||||||  || ||||| ||||||||||    
T  855752 tccctatttgcattttatagggactattttggtctggaggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactac 855653  T
Q  234 aatat 238  Q
    |||||    
T  855652 aatat 855648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 29242513 - 29242646
Alignment:
Q  106 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggac---tagtttggagaactaaaagtattcattttttgtaaaatgt 202  Q
    |||||||| ||||||  | |||||||||||||| |||||||||||||||||||||||   || | ||| | |||||||||||  ||||||||||||| |     
T  29242513 tttagtccttacaaaaaaattattcacttttagcccctatttgcattttatagggactattattgtgggggactaaaagtatcgattttttgtaaaaag- 29242611  T
Q  203 tttaaaaatagagattattcttacaaactacaatat 238  Q
      | ||||||| || ||||||||||||||| |||||    
T  29242612 -gtcaaaatagggactattcttacaaactataatat 29242646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 27694475 - 27694574
Alignment:
Q  114 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 213  Q
    |||||||  ||||||||||||||| ||||||||  ||||||||||||| || || | || ||||||| |||  ||||||||||||| ||||| |||||||    
T  27694475 ctacaaaaaatttattcacttttaatccctattcacattttatagggattatttagaaggactaaaattatctattttttgtaaaaagtttttaaaatag 27694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 434511 - 434598
Alignment:
Q  144 atttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaact 231  Q
    |||||||||||||||| |||| ||||||| || |||| ||| ||||||||  |||| ||||| |||| |  || ||||||||||||||    
T  434511 atttgcattttataggaactattttggaggacgaaaaatatccattttttagaaaaagttttgaaaagatggactattcttacaaact 434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 16894 - 16999
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||| ||||||| |||||| ||||| ||||||| || ||||||    
T  16894 tttattcacttttagtccctatttgtattttatagggactattttagaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattct 16993  T
Q  224 tacaaa 229  Q
    ||||||    
T  16994 tacaaa 16999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 152141 - 152258
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 223  Q
    |||| ||||||||||||| |||||||||||||||| ||||| |||| |  ||||||| ||||||||||||| || | ||||||||||||| || ||||||    
T  152141 tttactcacttttagtccttatttgcattttatagagactattttgaaagactaaaaatattcattttttgcaagaagttttaaaaatagggactattct 152240  T
Q  224 tacaaactacaatattat 241  Q
    ||||| ||||||||||||    
T  152241 tacaatctacaatattat 152258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 253697 - 253831
Alignment:
Q  104 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtt 203  Q
    ||||||||| |||||||  | ||||||| ||||| || |||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||||||   |    
T  253697 aatttagtctctacaaaaaaattattcatttttaatctctatctgcattttatagggactattttggaggattaaaagtatccattttttgtaaaaaagt 253796  T
Q  204 ttaaaaatagagattattcttacaaactacaatatt 239  Q
    || |||||||||| ||| ||||||||||| ||||||    
T  253797 tt-aaaatagagactatccttacaaactataatatt 253831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 48396 - 48514
Alignment:
Q  125 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaaaaatagagattattc 222  Q
    |||| |||||||||||| ||||| |||||||||| ||||| ||||||  ||||||||||| ||  |||||||||||| ||||| |||| || || | |||    
T  48396 ttatccacttttagtccatattttcattttatagagactattttggatgactaaaagtatccattttttttgtaaaaagttttcaaaagagggactgttc 48495  T
Q  223 ttacaaactacaatattat 241  Q
    ||| |||||||||| ||||    
T  48496 ttataaactacaattttat 48514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 3418 - 3352
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    ||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||||||| ||||||||    
T  3418 attcacttttagtccctatttgcgttttagagggacaattttggaggactaaaagtatccatttttt 3352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 179 - 113
Alignment:
Q  127 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 193  Q
    |||||||||||||| |||||| ||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  179 attcacttttagtctctatttacattttagagggactatcttggaggactaaaagtatccatttttt 113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 5440 - 5551
Alignment:
Q  124 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattc 222  Q
    |||||||| ||||||||||||||||||||||  |||||||| |||||||     ||||||| || ||||||||| || ||||| ||||||| || || |     
T  5440 tttattcatttttagtccctatttgcattttcaagggactattttggag-----aaagtatccatttttttgtataaagttttcaaaatagggactactt 5534  T
Q  223 ttacaaactacaatatt 239  Q
    |||||||||| ||||||    
T  5535 ttacaaactaaaatatt 5551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 7458 - 7495
Alignment:
Q  118 aaattatttattcacttttagtccctatttgcatttta 155  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  7458 aaattttttattcatttttagtccctatttgcatttta 7495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 363064 - 363140
Alignment:
Q  145 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattatt 221  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||  ||||||||||||| ||| ||||||||  |||||||    
T  363064 tttgctttttataaggattactttggaggactaaaaatatctattttttgtaaaaagttctaaaaataaggattatt 363140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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