View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_286 (Length: 251)

Name: NF10829A_low_286
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_286
NF10829A_low_286
[»] chr4 (5 HSPs)
chr4 (13-236)||(24666621-24666844)
chr4 (13-243)||(34941551-34941782)
chr4 (13-244)||(18363426-18363653)
chr4 (13-244)||(36599275-36599502)
chr4 (60-135)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (13-132)||(26240615-26240735)
chr1 (152-243)||(26240779-26240870)
[»] chr3 (2 HSPs)
chr3 (60-244)||(53242714-53242900)
chr3 (37-188)||(43479315-43479456)
[»] chr2 (2 HSPs)
chr2 (73-236)||(19697413-19697568)
chr2 (182-236)||(13265597-13265651)
[»] chr8 (1 HSPs)
chr8 (123-227)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
Q  13 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666621 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 24666720  T
Q  113 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 212  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| |    
T  24666721 cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca 24666820  T
Q  213 accattgattcaatcaaacggtat 236  Q
    ||||||||||||||||||||||||    
T  24666821 accattgattcaatcaaacggtat 24666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 34941782 - 34941551
Alignment:
Q  13 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 111  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34941782 agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 34941683  T
Q  112 acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta 211  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||  ||||||||||||||| |||||||||| |||||||| |||||||||     
T  34941682 acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc 34941583  T
Q  212 aaccattgattcaatcaaacggtatattcttc 243  Q
    |||| |||||||||||||||||||| ||||||    
T  34941582 aaccgttgattcaatcaaacggtattttcttc 34941551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 18363426 - 18363653
Alignment:
Q  13 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  18363426 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 18363523  T
Q  113 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 212  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  18363524 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 18363621  T
Q  213 accattgattcaatcaaacggtatattcttcg 244  Q
    ||||||||||||||| || ||||| |||||||    
T  18363622 accattgattcaatcgaatggtattttcttcg 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 36599502 - 36599275
Alignment:
Q  13 agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  36599502 agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta 36599405  T
Q  113 cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa 212  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  36599404 cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca 36599307  T
Q  213 accattgattcaatcaaacggtatattcttcg 244  Q
    ||||||||||||||| || ||||| |||||||    
T  36599306 accattgattcaatcgaatggtattttcttcg 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
Q  60 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 135  Q
    |||||||||||| ||| ||||||||||||||| ||||||| | | | |||| ||  ||||||||||||||||||||    
T  8752465 tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag 8752390  T

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Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
Q  13 agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 111  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26240615 agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt 26240714  T
Q  112 acagatttcagaggagttgaa 132  Q
    ||| ||||||  |||||||||    
T  26240715 acatatttcaagggagttgaa 26240735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 26240779 - 26240870
Alignment:
Q  152 agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatattcttc 243  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  26240779 agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttc 26240870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 53242900 - 53242714
Alignment:
Q  60 tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca 158  Q
    |||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| |   |||||||| |||||||| ||||||||||||| |||    
T  53242900 tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca 53242801  T
Q  159 agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtatattcttcg 244  Q
    | |||  | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||    
T  53242800 aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcg 53242714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
Q  37 tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag 135  Q
    |||| ||||||| || | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||           | |||||||| |     
T  43479315 tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa 43479403  T
Q  136 gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct 188  Q
    ||||||||||||||||||| |||| |||  |||| |||||||||| |||||||    
T  43479404 gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct 43479456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 19697568 - 19697413
Alignment:
Q  73 aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa 172  Q
    ||||||||||||||||||| |||||||||||||| ||||       | || ||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  19697568 aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa 19697476  T
Q  173 aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 236  Q
    |||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| ||||    
T  19697475 aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtat 19697413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
Q  182 atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat 236  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  13265651 atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat 13265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
Q  123 aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt 222  Q
    |||||||||| | ||||| ||||||||||||||||||||||  |||| ||||||| || |||||||||||||  |||| |||||||||  |||||||| |    
T  32566462 aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat 32566558  T
Q  223 caatc 227  Q
    |||||    
T  32566559 caatc 32566563  T

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