View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_291 (Length: 250)
Name: NF10829A_low_291
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_291 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 37181770 - 37181526
Alignment:
| Q |
1 |
ttcaccatacttctcgtgcgtcccttgttttgtcgaaaatattttcgttcggattttaaaatttagagtgtgtttttcttgttcgaaatatataatctga |
100 |
Q |
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| T |
37181770 |
ttcaccatacttctcgtgcgtcccttgttttctcgaaaatattttcgtttggattttaaaatttagagtgtgtttttcttgttcggaatatataatccga |
37181671 |
T |
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| Q |
101 |
acgcattgtacatactatttgaatttgttctcttccaccacacttttattttatgaaattactcagtttagattatactataaatacatcaactttagtt |
200 |
Q |
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| T |
37181670 |
acacattgtacatactatttgaatccgttctcttccaccaca-ttttattttatgaaattactctgtttagattatactataaatgcatcaactttagtt |
37181572 |
T |
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| Q |
201 |
aattaatttgtctctcataaaaatgatcggaggtagtataatttag |
246 |
Q |
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| T |
37181571 |
aattaatttgtctctcataaaaatgatcggagagagtataatttag |
37181526 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 33012940 - 33012981
Alignment:
| Q |
182 |
aaatacatcaactttagttaattaatttgtctctcataaaaa |
223 |
Q |
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| T |
33012940 |
aaatacatcaactttagttaatccatttgtctcttataaaaa |
33012981 |
T |
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