View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_299 (Length: 250)
Name: NF10829A_low_299
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_299 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 19370106 - 19369881
Alignment:
| Q |
20 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370106 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
19370007 |
T |
|
| Q |
120 |
tagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatca |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19370006 |
tagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaacagtactaaacaccatgacaattcagattgccgaatca |
19369907 |
T |
|
| Q |
220 |
gtagatacaaatacaaaactccaaac |
245 |
Q |
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|||||||||||||||||||||||||| |
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| T |
19369906 |
gtagatacaaatacaaaactccaaac |
19369881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 49856712 - 49856554
Alignment:
| Q |
78 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
177 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||||||||| || |||| |
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| T |
49856712 |
tgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcagaat |
49856613 |
T |
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| Q |
178 |
tcaagagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
236 |
Q |
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| T |
49856612 |
tcaagagtactaagcatcatgaaaattcagagtgccaaatttctggatacaaatacaaa |
49856554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 50815364 - 50815518
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50815364 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50815463 |
T |
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| Q |
182 |
gagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
236 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| ||||||||||| |
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| T |
50815464 |
gagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaa |
50815518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 50860500 - 50860346
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50860500 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50860401 |
T |
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| Q |
182 |
gagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
236 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| ||||||||||| |
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| T |
50860400 |
gagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaa |
50860346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 39559581 - 39559717
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||| |||| |||||| ||||||| ||||||||| |||||||||| |||||||| || |||| |||| |
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| T |
39559581 |
ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatttgctaaatatataatgcagaattcaa |
39559680 |
T |
|
| Q |
182 |
gagtactaaacaccatgacaattcagattgccgaatc |
218 |
Q |
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||||| ||| |||||||||||||||| |||| |||| |
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| T |
39559681 |
gagtattaaggaccatgacaattcagagtgccaaatc |
39559717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 49868094 - 49867974
Alignment:
| Q |
82 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
181 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||| || |||| ||| |
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| T |
49868094 |
ccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaattcag |
49867995 |
T |
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| Q |
182 |
gagtactaaacaccatgacaa |
202 |
Q |
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||||||| | |||||||||| |
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| T |
49867994 |
gagtactgaggaccatgacaa |
49867974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 49973158 - 49973001
Alignment:
| Q |
87 |
atgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagta |
186 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| || |||| | |||||| |||| |||||||||||||| ||||||| ||||||||| |
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| T |
49973158 |
atgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaattcaagagta |
49973059 |
T |
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| Q |
187 |
ctaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaa |
244 |
Q |
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|| | | |||||| |||||||| |||| ||| ||||||||| |||||| ||||||| |
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|
| T |
49973058 |
cttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaa |
49973001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 49979391 - 49979304
Alignment:
| Q |
149 |
ttcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
236 |
Q |
| |
|
|||||||||| || |||||| || | || | ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||| |
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| T |
49979391 |
ttcaatttgctaactatatcatgcataattgaagagtactaagaaccatgacaattcagggtgccaaatccgtagagacaaatacaaa |
49979304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 2216 - 2063
Alignment:
| Q |
91 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
190 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
2216 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
2117 |
T |
|
| Q |
191 |
acaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaa |
244 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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| T |
2116 |
gcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaa |
2063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 3762 - 3609
Alignment:
| Q |
91 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
190 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
3762 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
3663 |
T |
|
| Q |
191 |
acaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaa |
244 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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|
| T |
3662 |
gcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaa |
3609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 31211699 - 31211807
Alignment:
| Q |
78 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
177 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| || ||||| |
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| T |
31211699 |
tgtaccagattgtcttttatatcatcttacaacatgctcacttagaagcataagaagcataaactgtgagcttcagtttgcaaaatatatcatgcagaac |
31211798 |
T |
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| Q |
178 |
tcaagagta |
186 |
Q |
| |
|
||| ||||| |
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|
| T |
31211799 |
tcaggagta |
31211807 |
T |
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