View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_300 (Length: 250)
Name: NF10829A_low_300
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_300 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 19505924 - 19506169
Alignment:
| Q |
6 |
agaatcatagacagtttaattgttgcttatggtaaaggaaaattaacatgcttccttgcagacttagaggcagtttttgatgtggtgcgaaggattttac |
105 |
Q |
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| T |
19505924 |
agaaccatagacagtttaattgttgcttatggtaaaggaaaattaacatgcttccttgcagacttagaggcagtttttgatgtggtgagaaggattttac |
19506023 |
T |
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| Q |
106 |
aatttatcttcattaaacggaaatgaaatattatatattattagttgatattattacacttttgtacttcatatatttaaatacct-aaaaaattattaa |
204 |
Q |
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| T |
19506024 |
aatttatcttctttaaacggaaatgaaatattatatattattagttgatattattacacttttggtcttcatatatttaaatacctaaaaaaaatattaa |
19506123 |
T |
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| Q |
205 |
tatgatttttggttaaacttcacattttttaagtacttataatata |
250 |
Q |
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| T |
19506124 |
tatgatttttggttaaacgtcacaccttttaagtacctataatata |
19506169 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 19482378 - 19482426
Alignment:
| Q |
15 |
gacagtttaattgttgcttatggtaaaggaaaattaacatgcttccttg |
63 |
Q |
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| T |
19482378 |
gacagtttagctgtagcttatgggaaaggaaaattaacatgcttccttg |
19482426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 36182288 - 36182235
Alignment:
| Q |
6 |
agaatcatagacagtttaattgttgcttatggtaaaggaaaattaacatgcttc |
59 |
Q |
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| T |
36182288 |
agaaccatagacagtatagtcgttgcttatggtaaaggaaaattaacaagcttc |
36182235 |
T |
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