View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_301 (Length: 250)
Name: NF10829A_low_301
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_301 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
| [»] scaffold1001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0145 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 12783 - 12552
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12783 |
gagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatga |
12684 |
T |
|
| Q |
109 |
taaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtt |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12683 |
taaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtt |
12584 |
T |
|
| Q |
209 |
tgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
12583 |
tatattataataatgatgagaatgatgatgtc |
12552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 16284934 - 16285165
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
16284934 |
gagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatga |
16285033 |
T |
|
| Q |
109 |
taaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtt |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16285034 |
taaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtt |
16285133 |
T |
|
| Q |
209 |
tgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
16285134 |
tatattataataatgatgagaatgatgatgtc |
16285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||| ||||||| ||| ||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18231449 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa |
18231546 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
18231547 |
attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc |
18231604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||| || ||||| |||| ||||||| || ||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11556070 |
gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa |
11555973 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
239 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
11555972 |
attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt |
11555916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 11098359 - 11098468
Alignment:
| Q |
117 |
aatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattat |
216 |
Q |
| |
|
||||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||| || |||||| |
|
|
| T |
11098359 |
aatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttatattat |
11098458 |
T |
|
| Q |
217 |
aataatgatg |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
11098459 |
aataatgatg |
11098468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 10641218 - 10641449
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatga |
108 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
10641218 |
gagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggatga |
10641317 |
T |
|
| Q |
109 |
taaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtt |
208 |
Q |
| |
|
|| |||| ||||| | |||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
10641318 |
tagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgaggt |
10641417 |
T |
|
| Q |
209 |
tgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
10641418 |
tatattataataatgatgagaatgatgatgtc |
10641449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 14970293 - 14970060
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatga |
108 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||||| ||||||||||||| ||||| ||||||| ||| || ||||| |||||||||||| |||||| |
|
|
| T |
14970293 |
gagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatga |
14970194 |
T |
|
| Q |
109 |
taaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatgag |
206 |
Q |
| |
|
|| |||| ||||||| ||||||||| |||| | ||| ||| | |||||| ||||||||||| |||| || ||||||||| |||||||||||||||| |
|
|
| T |
14970193 |
tagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatgat |
14970094 |
T |
|
| Q |
207 |
tttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
|| ||||||||||| |||||||||| |||||| |
|
|
| T |
14970093 |
gttatattataataacaatgagaatgacgatgtc |
14970060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
| Q |
85 |
taaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
184 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||| ||||| | ||| |||||||||| ||||||||| | | | ||||||||| ||||||| || | || |
|
|
| T |
10906699 |
taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat |
10906798 |
T |
|
| Q |
185 |
tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
10906799 |
aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc |
10906854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||| ||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || || |
|
|
| T |
9191181 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa |
9191082 |
T |
|
| Q |
183 |
attactacgatgggaaa |
199 |
Q |
| |
|
|| | ||||||| |||| |
|
|
| T |
9191081 |
ataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22614701 |
gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa |
22614800 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
239 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
22614801 |
attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt |
22614857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| ||||||||||| || | ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
11655631 |
gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa |
11655532 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
11655531 |
attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc |
11655474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 20026200 - 20025970
Alignment:
| Q |
10 |
agatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgat |
109 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| | | ||||||||||||||||||||| || ||| || |||||||| ||||||||| | ||||| |
|
|
| T |
20026200 |
agatgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgat |
20026101 |
T |
|
| Q |
110 |
aaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagttt |
209 |
Q |
| |
|
| ||| ||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| || |
|
|
| T |
20026100 |
agagaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgtt |
20026001 |
T |
|
| Q |
210 |
gtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||||||||| |||| |||||||||||| |
|
|
| T |
20026000 |
atattataataacaatgacaatgatgatgtc |
20025970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
| Q |
125 |
ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa |
218 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
13477489 |
ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa |
13477588 |
T |
|
| Q |
219 |
taatgatg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
13477589 |
taatgatg |
13477596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
| Q |
12 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
110 |
Q |
| |
|
||||||| |||||||||||| | || |||| || || || ||||||||| |||||| |||| ||| || |||||||||||||||||| ||| ||||| |
|
|
| T |
4531649 |
atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata |
4531748 |
T |
|
| Q |
111 |
aagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
184 |
Q |
| |
|
|||| ||||||| ||| ||| |||| | | || ||||| ||||| | | |||||||||||||||||| |||| |
|
|
| T |
4531749 |
gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat |
4531820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 24831924 - 24832161
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatga |
108 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| || |||| | ||||||| ||||||||||| |
|
|
| T |
24831924 |
gagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatga |
24832023 |
T |
|
| Q |
109 |
taaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaatga |
202 |
Q |
| |
|
|| |||| ||||||| |||||||||||| | | ||| ||||| |||| || ||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
24832024 |
tagagagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaatga |
24832123 |
T |
|
| Q |
203 |
tgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
|||| || || ||||||| |||||||||||| |||||| |
|
|
| T |
24832124 |
tgaggttatactataatattgatgagaatgacgatgtc |
24832161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 14481524 - 14481761
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatga |
108 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| || |||| ||||||| ||||||||||| |
|
|
| T |
14481524 |
gagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatga |
14481623 |
T |
|
| Q |
109 |
taaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaatga |
202 |
Q |
| |
|
|| |||| ||||||| |||||||||||||| | ||| ||||| |||| || |||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14481624 |
tagagagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacatga |
14481723 |
T |
|
| Q |
203 |
tgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
|||| || || ||||||| ||||||| |||| |||||| |
|
|
| T |
14481724 |
tgaggttatactataatattgatgaggatgacgatgtc |
14481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 17791091 - 17790941
Alignment:
| Q |
24 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagaggaatgatg |
123 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||||| | |||| ||||||| |
|
|
| T |
17791091 |
ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg |
17790992 |
T |
|
| Q |
124 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatat |
174 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
17790991 |
aggagtcctataactttgacagagagtgatgatgattaatattatatatat |
17790941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 19099531 - 19099381
Alignment:
| Q |
24 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagaggaatgatg |
123 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||||| | |||| ||||||| |
|
|
| T |
19099531 |
ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg |
19099432 |
T |
|
| Q |
124 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatat |
174 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
19099431 |
aggagtcctataactttgacagagagtgatgatgattaatattatatatat |
19099381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
| Q |
90 |
tggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagt |
150 |
Q |
| |
|
||||||||||| ||| ||||| |||| ||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
22159931 |
tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt |
22159871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
| Q |
12 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
110 |
Q |
| |
|
||||||| | |||||||||| | ||||||| ||||||| ||||||| |||||||| |||| ||| | |||||||||||||||||| ||| ||||| |
|
|
| T |
44586360 |
atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata |
44586459 |
T |
|
| Q |
111 |
aagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg |
210 |
Q |
| |
|
|||| ||||||| ||| ||| ||| || ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
44586460 |
gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta |
44586557 |
T |
|
| Q |
211 |
tattataataatgatga |
227 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
44586558 |
aattataataataatga |
44586574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 24786375 - 24786317
Alignment:
| Q |
9 |
gagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggt |
67 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | |||||| |||||| |||||||| |
|
|
| T |
24786375 |
gagatgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggt |
24786317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
||||| ||| ||| ||| |||||||||| |||| | | ||| ||||||||||||| | | ||||||| ||||| | ||||||| ||||| || ||| || |
|
|
| T |
1545 |
gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa |
1447 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
1446 |
attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc |
1389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
| Q |
89 |
gtggtgatataagcggatgataaagaggaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
188 |
Q |
| |
|
|||||||||||| ||| |||| || | ||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | | |
|
|
| T |
1567041 |
gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat |
1567140 |
T |
|
| Q |
189 |
acgatgggaaatga |
202 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1567141 |
acgatgagaaatga |
1567154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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