View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_303 (Length: 250)

Name: NF10829A_low_303
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_303
NF10829A_low_303
[»] chr1 (2 HSPs)
chr1 (5-99)||(38178027-38178121)
chr1 (118-208)||(38178112-38178203)
[»] chr4 (1 HSPs)
chr4 (155-211)||(49005884-49005941)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 38178027 - 38178121
Alignment:
Q  5 agtttggtgttactttgataagttttaaaattcaattcacctaatttatttattttaaataaacagtgttgtgtgtaaagaaaaaatcaaatatt 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||    
T  38178027 agtttgctgttactttgataagttttaaaattcaattcacctaatttatttattttaaataaacagtgttgtgtgaaagaaaaaaatcaactatt 38178121  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 38178112 - 38178203
Alignment:
Q  118 atcaaccatttaaaggtaactatatatttgaatgtttgtttgtacctcctaactcaatcgataatat-taaattgttaaattaaacattttt 208  Q
    |||||| |||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||    
T  38178112 atcaactatttaaagataattatatatttgagtgtttgtttgtatctcctaactcaatcgataatatcaaaattattaaattaaacattttt 38178203  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 49005884 - 49005941
Alignment:
Q  155 gtttgtacctcctaactcaatcgataatatt-aaattgttaaattaaacatttttatc 211  Q
    |||||| |||||| |||||||||||||| |  ||||||||| ||||||||||||||||    
T  49005884 gtttgtgcctccttactcaatcgataatgtcgaaattgttagattaaacatttttatc 49005941  T

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