View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_304 (Length: 250)
Name: NF10829A_low_304
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_304 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 673433 - 673675
Alignment:
| Q |
1 |
ggcttctggggcacctagtttggctacacttggttgttccaagatgcttattactgctgctggaaaggatcatcgtctctttagggacagatcagaaaga |
100 |
Q |
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| T |
673433 |
ggcttctggggcacctagtttggctacacttggttgttccaggatgcttattactgctgctggaaaggatcaacttctctttagggacagatcagaaaga |
673532 |
T |
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| Q |
101 |
tattatgaggctgtgaagaagagtggatggaaatgtgaagtggaattctttgaagagaaagatgaggatcatgtttattacatgtatgatcttgaaactg |
200 |
Q |
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| T |
673533 |
tattttgaggctgtgaagaagagtggatggaaaggggaagtggaattctttgaagagaaagatgaggatcatgtttattacatgtatgatcttgaaactg |
673632 |
T |
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| Q |
201 |
accaatctaaaagattcattaaagttttggttgatattcttcg |
243 |
Q |
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| T |
673633 |
accaatctaaaagattcattaaagttttggttgattttcttcg |
673675 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 15233799 - 15233733
Alignment:
| Q |
112 |
tgtgaagaagagtggatggaaatgtgaagtggaattctttgaagagaaagatgaggatcatgtttat |
178 |
Q |
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| T |
15233799 |
tgtgaagaatagtgggtggaaagggaaattggaattctttgaagagaaagatgagggtcatgtttat |
15233733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 47301860 - 47301937
Alignment:
| Q |
101 |
tattatgaggctgtgaagaagagtggatggaaatgtgaagtggaattctttgaagagaaagatgaggatcatgtttat |
178 |
Q |
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| T |
47301860 |
tattatgagcttgtgaagaagagtggttggaaagggaaattggaattgtttgaagaagaagatgaagatcatgtttat |
47301937 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 17473733 - 17473799
Alignment:
| Q |
112 |
tgtgaagaagagtggatggaaatgtgaagtggaattctttgaagagaaagatgaggatcatgtttat |
178 |
Q |
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| T |
17473733 |
tgtgaagaatagtgggtggaatgggaaattggaattctttgaagagaaagatgagaaccatgtttat |
17473799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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