View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_308 (Length: 249)
Name: NF10829A_low_308
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_308 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4082869 - 4083112
Alignment:
| Q |
1 |
agacaaagaacatagaacaaattgtcagcaatagacatcacttacatagataatagcttttgtcatgggaagaagattgccctatgacaatgccaataat |
100 |
Q |
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| T |
4082869 |
agacaaagaacatagaacaaattgtcagcaatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaat |
4082968 |
T |
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| Q |
101 |
tcattgataggtccatttctatatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaa |
200 |
Q |
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| T |
4082969 |
ttattaataggtccatttctaaatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaa |
4083068 |
T |
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| Q |
201 |
gaaaattgacgccgccccctacaacaccgatatcaaacaccaaa |
244 |
Q |
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| T |
4083069 |
gaaaattgacgccgccccctacaacaccgatatcaaacaccaaa |
4083112 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
157 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
200 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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