View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_31 (Length: 464)
Name: NF10829A_low_31
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 4 - 459
Target Start/End: Original strand, 3067320 - 3067775
Alignment:
| Q |
4 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067320 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
3067419 |
T |
|
| Q |
104 |
taaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067420 |
taaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
3067519 |
T |
|
| Q |
204 |
gccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067520 |
gccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcg |
3067619 |
T |
|
| Q |
304 |
tcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactaccta |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067620 |
tcaggatccaccagtgagtaactttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactaccta |
3067719 |
T |
|
| Q |
404 |
atttaggaaaataatgacatatattttcaggctgagaccacactatagtccaacct |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3067720 |
atttaggaaaataatgacatatattttcaggctgagaccacactatagtccaacct |
3067775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 456
Target Start/End: Original strand, 3071184 - 3071411
Alignment:
| Q |
229 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
328 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||| || |
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|
| T |
3071184 |
agatcctttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgtt |
3071283 |
T |
|
| Q |
329 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
428 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||| | || || ||| ||||||||||| |
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|
| T |
3071284 |
ttggacaccgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatt |
3071383 |
T |
|
| Q |
429 |
ttcaggctgagaccacactatagtccaa |
456 |
Q |
| |
|
|| ||| |||||||||||| |||||||| |
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|
| T |
3071384 |
tttaggatgagaccacactgtagtccaa |
3071411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 243 - 456
Target Start/End: Complemental strand, 3055768 - 3055555
Alignment:
| Q |
243 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
342 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
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|
| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
|
| Q |
343 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
442 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| || ||||| ||||||||| ||||| | ||||| |
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|
| T |
3055668 |
gttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagacc |
3055569 |
T |
|
| Q |
443 |
acactatagtccaa |
456 |
Q |
| |
|
||||||| |||||| |
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|
| T |
3055568 |
acactatggtccaa |
3055555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 229 - 456
Target Start/End: Complemental strand, 3040773 - 3040546
Alignment:
| Q |
229 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
328 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | |
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|
| T |
3040773 |
agatcctttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactat |
3040674 |
T |
|
| Q |
329 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
428 |
Q |
| |
|
| |||||||| ||| ||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
3040673 |
ctggacaccgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatt |
3040574 |
T |
|
| Q |
429 |
ttcaggctgagaccacactatagtccaa |
456 |
Q |
| |
|
| ||| |||||||||||| |||||||| |
|
|
| T |
3040573 |
tcgaggatgagaccacactgtagtccaa |
3040546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 459
Target Start/End: Complemental strand, 3034906 - 3034690
Alignment:
| Q |
243 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
342 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
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|
| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
|
| Q |
343 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
442 |
Q |
| |
|
| || ||||||| || |||||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||| ||||||| ||||| |
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|
| T |
3034806 |
ttcggtctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagacc |
3034707 |
T |
|
| Q |
443 |
acactatagtccaacct |
459 |
Q |
| |
|
||||| | ||||||||| |
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|
| T |
3034706 |
acactgtggtccaacct |
3034690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 243 - 402
Target Start/End: Complemental strand, 3042948 - 3042789
Alignment:
| Q |
243 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
342 |
Q |
| |
|
||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
|
| Q |
343 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacct |
402 |
Q |
| |
|
||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3042848 |
gttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacct |
3042789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 402
Target Start/End: Original strand, 3063557 - 3063682
Alignment:
| Q |
277 |
tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagc |
376 |
Q |
| |
|
|||||||||||||| ||| ||||||| | |||||| | ||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
3063557 |
tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagc |
3063656 |
T |
|
| Q |
377 |
tattatatccacaaacaccactacct |
402 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3063657 |
tattatatccacaaacaccactacct |
3063682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 25125326 - 25125466
Alignment:
| Q |
243 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
342 |
Q |
| |
|
|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
|
| Q |
343 |
gttggcctcttattctctcccaaagtgcagtagctattata |
383 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
25125426 |
gttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 3052618 - 3052679
Alignment:
| Q |
4 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
67 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3052618 |
attagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
5 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
62 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
|
|
| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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