View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_316 (Length: 248)
Name: NF10829A_low_316
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_316 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35449811 - 35450052
Alignment:
| Q |
1 |
aacatcatgagagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggag |
100 |
Q |
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| T |
35449811 |
aacatcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggag |
35449910 |
T |
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| Q |
101 |
tttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttc |
200 |
Q |
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| T |
35449911 |
tttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttc |
35450010 |
T |
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| Q |
201 |
accaattattgatcaatcaatgattgaagtactaacaccaaa |
242 |
Q |
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| T |
35450011 |
accaattattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Back To:
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
10 |
agagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
78 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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