View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10829A_low_318 (Length: 248)
Name: NF10829A_low_318
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_318 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 48824715 - 48824855
Alignment:
| Q |
3 |
atttgtcaaaaaataacatgtgggtatggcatataaaatcaatgagttttaaataagacaagtgaatatggaaatactggcctcttattgtatttcttct |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48824715 |
atttgtcaaaaaataacatgtgggtatggcatataaaatcaatgagttttaaataagacaagtgaatatggaaatactgacctcttattgtatttcttct |
48824814 |
T |
|
| Q |
103 |
attaccgtagaaggtgatacatataaagtttgtgttattgt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48824815 |
attaccgtagaaggtgatacatataaagtttgtgttattgt |
48824855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 48825428 - 48825531
Alignment:
| Q |
145 |
gaagctatcaggtctccatgtctgagtaaataaaggtattgaaacagtctccccataacgatatagctgcaaaccacaaatcccaattgcattcaaaaca |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48825428 |
gaagctatcaggtttccatgtctgagtaaaaaaaggtattgaaacagtctccccataacgatatagctgcaaaccacaaatcccaattgcattcaaaaca |
48825527 |
T |
|
| Q |
245 |
gatg |
248 |
Q |
| |
|
|||| |
|
|
| T |
48825528 |
gatg |
48825531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 53053792 - 53053895
Alignment:
| Q |
145 |
gaagctatcaggtctccatgtctgagtaaataaaggtattgaaacagtctccccataacgatatagctgcaaaccacaaatcccaattgcattcaaaaca |
244 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53053792 |
gaagctatcaggtctccacgtctcagtaaagaaaggtattgaaacagtttccccataacgatatagctgcaaaccacaaatcccaattgcattcatgaca |
53053891 |
T |
|
| Q |
245 |
gatg |
248 |
Q |
| |
|
|||| |
|
|
| T |
53053892 |
gatg |
53053895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 53341777 - 53341702
Alignment:
| Q |
145 |
gaagctatcaggtctccatgtctgagtaaataaaggtattgaaacagtctccccataacgatatagctgcaaacca |
220 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53341777 |
gaagctatcaggtctccacgtctccgtaaagaaaggtattgaaacagttcccccataacgatatagctgcaaacca |
53341702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University