View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_320 (Length: 248)
Name: NF10829A_low_320
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_320 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 31251981 - 31251788
Alignment:
| Q |
1 |
agaagttttatggagttttgggatggtaaccctaataaatcaccacttttgtgtatgaatggcatctagagttccaaacagaaacaatgacgagaaaaga |
100 |
Q |
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|||||||||||| |||||||| ||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
31251981 |
agaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagaattccaaacagaaacaatgacgagaaaaga |
31251882 |
T |
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| Q |
101 |
aacacatcatttgattgnnnnnnnnnnnnnnatgacttagtatgtaaaataacaggtttaatgttatttttttga-ggaagagtcggtttaata |
193 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31251881 |
aacacatcatttgattgtttttttcctttttatgacttagtatgtaaaataacaggtttaatgttatttttttgagggaagagtcggtttaata |
31251788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 25815162 - 25815278
Alignment:
| Q |
1 |
agaagttttatggagttttgggatggtaaccctaataaatcaccacttttgtgtatgaatggcatctagagttccaaacagaaacaatgacgagaaaaga |
100 |
Q |
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|||||||||||| |||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25815162 |
agaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaaga |
25815261 |
T |
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| Q |
101 |
aacacatcatttgattg |
117 |
Q |
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||||||||||||||||| |
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| T |
25815262 |
aacacatcatttgattg |
25815278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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