View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_321 (Length: 248)

Name: NF10829A_low_321
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_321
NF10829A_low_321
[»] chr2 (17 HSPs)
chr2 (1-130)||(10355676-10355805)
chr2 (1-130)||(35734525-35734654)
chr2 (1-130)||(16254978-16255107)
chr2 (1-130)||(7759303-7759433)
chr2 (1-130)||(28808730-28808864)
chr2 (3-128)||(16256196-16256321)
chr2 (3-130)||(34210347-34210474)
chr2 (190-244)||(10355864-10355918)
chr2 (190-244)||(16255167-16255221)
chr2 (190-244)||(35734411-35734465)
chr2 (15-130)||(43589809-43589924)
chr2 (190-244)||(28808923-28808977)
chr2 (198-244)||(7759071-7759117)
chr2 (198-240)||(7759119-7759161)
chr2 (198-241)||(7759202-7759245)
chr2 (191-230)||(16256384-16256423)
chr2 (43-114)||(35851671-35851742)
[»] scaffold0470 (1 HSPs)
scaffold0470 (3-130)||(60-187)
[»] chr8 (11 HSPs)
chr8 (3-130)||(6610772-6610899)
chr8 (7-130)||(43633687-43633808)
chr8 (3-128)||(36557098-36557223)
chr8 (3-130)||(21595150-21595277)
chr8 (6-128)||(2955985-2956107)
chr8 (191-244)||(6610658-6610711)
chr8 (3-127)||(40977601-40977725)
chr8 (190-241)||(43633868-43633919)
chr8 (43-130)||(43047996-43048083)
chr8 (44-130)||(22976474-22976560)
chr8 (199-231)||(27424325-27424357)
[»] chr1 (23 HSPs)
chr1 (1-130)||(11376681-11376810)
chr1 (1-130)||(49622841-49622969)
chr1 (6-130)||(29743475-29743599)
chr1 (1-130)||(15544486-15544615)
chr1 (3-130)||(261672-261798)
chr1 (3-130)||(42886737-42886864)
chr1 (3-130)||(44565069-44565196)
chr1 (1-128)||(46833223-46833352)
chr1 (1-130)||(51621791-51621920)
chr1 (15-130)||(2326768-2326883)
chr1 (190-244)||(49622727-49622781)
chr1 (190-244)||(261558-261612)
chr1 (190-244)||(2326655-2326709)
chr1 (190-244)||(15544675-15544729)
chr1 (190-244)||(44565256-44565310)
chr1 (190-244)||(51621678-51621732)
chr1 (190-244)||(11376870-11376924)
chr1 (191-244)||(29743658-29743711)
chr1 (190-244)||(46833445-46833499)
chr1 (43-130)||(37661901-37661989)
chr1 (15-130)||(33505744-33505859)
chr1 (198-241)||(42886921-42886964)
chr1 (77-130)||(15429337-15429390)
[»] chr6 (7 HSPs)
chr6 (1-130)||(18227374-18227503)
chr6 (17-128)||(20219057-20219168)
chr6 (17-128)||(22113082-22113193)
chr6 (17-130)||(11455187-11455297)
chr6 (198-244)||(20219243-20219289)
chr6 (198-244)||(22113268-22113314)
chr6 (190-233)||(18227562-18227605)
[»] chr5 (9 HSPs)
chr5 (6-130)||(35384223-35384347)
chr5 (3-124)||(30411399-30411520)
chr5 (3-130)||(1751359-1751486)
chr5 (3-122)||(11726579-11726698)
chr5 (5-130)||(10329701-10329828)
chr5 (190-244)||(35384406-35384460)
chr5 (3-130)||(37276008-37276135)
chr5 (190-244)||(30411279-30411333)
chr5 (43-130)||(37275249-37275336)
[»] chr7 (9 HSPs)
chr7 (3-130)||(29008622-29008749)
chr7 (1-130)||(12313887-12314016)
chr7 (3-128)||(47645487-47645612)
chr7 (3-130)||(1827953-1828080)
chr7 (3-130)||(33118696-33118828)
chr7 (14-129)||(44119040-44119155)
chr7 (194-244)||(29008509-29008559)
chr7 (198-244)||(42027803-42027849)
chr7 (198-234)||(40040517-40040553)
[»] chr4 (21 HSPs)
chr4 (3-130)||(37563788-37563915)
chr4 (15-130)||(38024524-38024639)
chr4 (3-130)||(6885015-6885143)
chr4 (3-130)||(29191025-29191151)
chr4 (3-130)||(55873560-55873687)
chr4 (54-130)||(54975830-54975906)
chr4 (1-130)||(29118956-29119085)
chr4 (3-128)||(42739582-42739707)
chr4 (14-130)||(49284074-49284189)
chr4 (3-130)||(1921209-1921336)
chr4 (3-130)||(22443731-22443858)
chr4 (190-244)||(29191204-29191258)
chr4 (190-244)||(54975965-54976019)
chr4 (15-130)||(41279202-41279317)
chr4 (5-128)||(47497566-47497690)
chr4 (190-241)||(38024414-38024465)
chr4 (48-116)||(8067199-8067268)
chr4 (198-244)||(6884912-6884958)
chr4 (190-244)||(37563973-37564027)
chr4 (3-128)||(39593207-39593332)
chr4 (198-244)||(55873758-55873804)
[»] scaffold0155 (1 HSPs)
scaffold0155 (11-128)||(28057-28174)
[»] chr3 (2 HSPs)
chr3 (14-130)||(46485484-46485600)
chr3 (13-114)||(7311392-7311490)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 10355676 - 10355805
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  10355676 atgggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaac 10355775  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  10355776 aatatcatgatttttatattattcacttca 10355805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 35734654 - 35734525
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  35734654 atgggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaac 35734555  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  35734554 aatatcatgatttttatattattcacttca 35734525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 16254978 - 16255107
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  16254978 atgggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttgaaac 16255077  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||| ||| ||||||||||||||||||    
T  16255078 aatatcaagatctttatattattcacttca 16255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 7759433 - 7759303
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaatta-cttttttctccctctaaacttaaaa 99  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||  |||||| ||||||||| |||||||    
T  7759433 atgggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattattttttttatccctctaaccttaaaa 7759334  T
Q  100 caatatcatgatttttatattattcacttca 130  Q
    |||||||||||||||||||||||||||||||    
T  7759333 caatatcatgatttttatattattcacttca 7759303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28808730 - 28808864
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttata-----agggaaggagagggattttaaaaccaaattacttttttctccctctaaactt 95  Q
    ||||||||||||| |||||||| ||||||||||||| || |||     |||| ||| ||||||||||||||||||||||||||||| ||||||||| |||    
T  28808730 atgggagggaagatattttaattaaatatgtgtttggttcataaggggaggggaggggagggattttaaaaccaaattacttttttatccctctaacctt 28808829  T
Q  96 aaaacaatatcatgatttttatattattcacttca 130  Q
    |||||||||||||||||||||||||||||||||||    
T  28808830 aaaacaatatcatgatttttatattattcacttca 28808864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 16256196 - 16256321
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| ||||||||| | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  16256196 gggaggggagggattttaatcaaatatatgtttgattcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 16256295  T
Q  103 tatcatgatttttatattattcactt 128  Q
    ||||| |||||||| |||||||||||    
T  16256296 tatcacgatttttaaattattcactt 16256321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 34210474 - 34210347
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  34210474 gggaggggagggattttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatag 34210375  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    |||||  ||||||| |||||||||||||    
T  34210374 tatcacaatttttaaattattcacttca 34210347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 10355864 - 10355918
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10355864 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 10355918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 16255167 - 16255221
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16255167 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 16255221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 35734465 - 35734411
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35734465 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 35734411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 43589924 - 43589809
Alignment:
Q  15 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttt 114  Q
    ||||||||||||||  |||||| || | ||||| |||  || ||||||||||| ||||||||||||| |||||||||  |||||||| |||||  |||||    
T  43589924 attttaatcaaatacatgtttggttcacaaggggagggcagagattttaaaactaaattacttttttatccctctaatattaaaacagtatcacaatttt 43589825  T
Q  115 tatattattcacttca 130  Q
    || |||||||||||||    
T  43589824 taaattattcacttca 43589809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 28808923 - 28808977
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28808923 gttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 28808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 7759117 - 7759071
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  7759117 aaaatattaggtattcataaatattagagcacttctaaaataatcta 7759071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 7759161 - 7759119
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataa 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  7759161 aaaatattaggtattcataaatattagagcacttctaaaataa 7759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 7759245 - 7759202
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataat 241  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  7759245 aaaatattaggtattcataaatatcagagcacttctaaaataat 7759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 16256384 - 16256423
Alignment:
Q  191 ttctaacaaaatattaggtattcataaatattagagcact 230  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  16256384 ttctaacaagatattgggtattcataaatattagagcact 16256423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 35851671 - 35851742
Alignment:
Q  43 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttt 114  Q
    |||||||||  | |||||| || |||||||||||||||| || ||||||  |||||||||| ||||||||||    
T  35851671 aagggaagggaaaggatttcaacaccaaattacttttttatcgctctaatattaaaacaatctcatgatttt 35851742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 187 - 60
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  187 gggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaa 88  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||    
T  87 tatcatgatttttatattattcacttca 60  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 6610899 - 6610772
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  6610899 gggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaa 6610800  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||    
T  6610799 tatcatgatttttatattattcacttca 6610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 43633687 - 43633808
Alignment:
Q  7 gggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatc 106  Q
    |||||| ||||||||| ||||  ||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  43633687 gggaagggattttaattaaat--gtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatc 43633784  T
Q  107 atgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||    
T  43633785 atgatttttatattattcacttca 43633808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 36557098 - 36557223
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  36557098 gggaggggagggattttaatcaaatatatgtttggtttacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 36557197  T
Q  103 tatcatgatttttatattattcactt 128  Q
    ||||| |||||||| |||||||||||    
T  36557198 tatcacgatttttaaattattcactt 36557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 21595277 - 21595150
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| || | ||||| ||||||  ||||||||||| ||||||||||||| |||||||||  |||||| |     
T  21595277 gggaggggagggattttaatcaaatatatgtttggttcagaaggggaggagaaagattttaaaactaaattacttttttatccctctaatattaaaatag 21595178  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||| |||||||| |||||||||||||    
T  21595177 tatcacgatttttaaattattcacttca 21595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 2955985 - 2956107
Alignment:
Q  6 agggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatat 105  Q
    |||| ||||||||||||||||||| |||||| || | ||||| |||  || ||||||||||| ||||||||||||| |||||||||  |||||| | |||    
T  2955985 aggggagagattttaatcaaatatatgtttggttcacaaggggagggtagagattttaaaactaaattacttttttatccctctaatattaaaatagtat 2956084  T
Q  106 catgatttttatattattcactt 128  Q
    || |||||||| ||||| |||||    
T  2956085 cacgatttttaaattatccactt 2956107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 6610711 - 6610658
Alignment:
Q  191 ttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  6610711 ttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 6610658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 40977601 - 40977725
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| |||||||| |||| ||||| |||  |||||| |     
T  40977601 gggaggggagggattttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattactgttttgtccctataatattaaaatag 40977700  T
Q  103 tatcatgatttttatattattcact 127  Q
    |||||  ||||||| ||||||||||    
T  40977701 tatcacaatttttaaattattcact 40977725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 43633868 - 43633919
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43633868 gttctaacaaaatattaggtattcataaatattagagcacttttaaaataat 43633919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 43047996 - 43048083
Alignment:
Q  43 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttttatattattcacttca 130  Q
    ||||| ||| |||| |||||||||| ||||||||||||| |||||||||  |||||| |  || | |||||||| |||||||||||||    
T  43047996 aaggggaggggaggaattttaaaactaaattacttttttatccctctaatattaaaatagcataacgatttttaaattattcacttca 43048083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 22976474 - 22976560
Alignment:
Q  44 agggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttttatattattcacttca 130  Q
    |||||||| ||||||| ||||||| ||||||||||||| ||||| |||  |||||| | |||||  ||||| | |||||||||||||    
T  22976474 agggaaggggagggatattaaaactaaattacttttttatccctataatattaaaatagtatcacaattttaaaattattcacttca 22976560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 27424357 - 27424325
Alignment:
Q  199 aaatattaggtattcataaatattagagcactt 231  Q
    |||||||||||||| ||||||||||||||||||    
T  27424357 aaatattaggtatttataaatattagagcactt 27424325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 11376681 - 11376810
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  11376681 atgggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttatccctctaaccttaaaac 11376780  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  11376781 aatatcatgatttttatattattcacttca 11376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 49622969 - 49622841
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  49622969 atgggagggaagaaattttaattaaatatgtgtttggtttataagggaag-agagggattttaaaaccaaattatttttttatccctctaaccttaaaac 49622871  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  49622870 aatatcatgatttttatattattcacttca 49622841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 29743475 - 29743599
Alignment:
Q  6 agggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatat 105  Q
    ||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  29743475 agggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatat 29743574  T
Q  106 catgatttttatattattcacttca 130  Q
    |||||||||||||||||||||||||    
T  29743575 catgatttttatattattcacttca 29743599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 15544486 - 15544615
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||||| ||||||||| ||||||||||||| || ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  15544486 atgggagggaagggattttaattaaatatgtgtttggttcataaggggaggggagggattttaaaaccaaattacctttttatccctctaaccttaaaac 15544585  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  15544586 aatatcatgatttttatattattcacttca 15544615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 261798 - 261672
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  261798 gggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttat-cctctaaccttaaaacaa 261700  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||    
T  261699 tatcatgatttttatattattcacttca 261672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 42886737 - 42886864
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||| ||||| ||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  42886737 gggatggaagggattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttatccctctaaccttaaaacaa 42886836  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||    
T  42886837 tatcatgatttttatattattcacttca 42886864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 44565069 - 44565196
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||||| ||||||||| ||| ||||||||||||| || ||||||| ||| |||||||||||||| |||||||| ||||| ||||||||| ||||||||||    
T  44565069 gggaggaaagagatttcaattaaatatgtgtttggttcataaggggaggggagggattttaaaatcaaattacctttttatccctctaaccttaaaacaa 44565168  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||    
T  44565169 tatcatgatttttatattattcacttca 44565196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 46833223 - 46833352
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattac--ttttttctccctctaaacttaaa 98  Q
    |||||||||||| ||||||||| ||||||||||||| || ||||||| ||| || ||||||||||||||||||||  |||||| ||||||||| ||||||    
T  46833223 atgggagggaagggattttaattaaatatgtgtttggttcataaggggaggggaaggattttaaaaccaaattacttttttttatccctctaaccttaaa 46833322  T
Q  99 acaatatcatgatttttatattattcactt 128  Q
    ||||||||||||||||| ||||||||||||    
T  46833323 acaatatcatgatttttctattattcactt 46833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 51621920 - 51621791
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||| ||  ||||||||| ||||||||||||| || ||||||  ||| ||| ||||||||||||||||||||||||| || || ||| ||||||||    
T  51621920 atgggaggaaatggattttaattaaatatgtgtttggttcataaggagaggggagagattttaaaaccaaattacttttttatcactgtaatcttaaaac 51621821  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  51621820 aatatcatgatttttatattattcacttca 51621791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 2326883 - 2326768
Alignment:
Q  15 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttt 114  Q
    |||||||| |||||||| |||| || ||| ||| ||| ||||||||||||||||||||||| |||||  |||||||| ||||||||||||| ||||||||    
T  2326883 attttaattaaatatgtatttggttcatacggggaggggagggattttaaaaccaaattacctttttacccctctaaccttaaaacaatattatgatttt 2326784  T
Q  115 tatattattcacttca 130  Q
    ||||||||||||||||    
T  2326783 tatattattcacttca 2326768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 49622781 - 49622727
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622781 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 49622727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 261612 - 261558
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  261612 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 261558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 2326709 - 2326655
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2326709 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 2326655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 15544675 - 15544729
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15544675 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 15544729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 44565256 - 44565310
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44565256 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 44565310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 51621732 - 51621678
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51621732 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 51621678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 11376870 - 11376924
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  11376870 gttctaacaaaatattaggtattcataaatattaaagcacttctaaaataatcta 11376924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 29743658 - 29743711
Alignment:
Q  191 ttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  29743658 ttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 29743711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 46833445 - 46833499
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  46833445 gttctaacaaaatattaggtattcataaatattagaacaattctaaaataatcta 46833499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 37661989 - 37661901
Alignment:
Q  43 aagggaaggagagggattttaaaaccaaattacttttttc-tccctctaaacttaaaacaatatcatgatttttatattattcacttca 130  Q
    ||||| ||| ||||||||||||||| |||||||||||||  |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37661989 aaggggaggggagggattttaaaactaaattactttttttatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37661901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 33505744 - 33505859
Alignment:
Q  15 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttt 114  Q
    |||| ||| |||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | |||||  |||||    
T  33505744 atttcaattaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatagtatcacaatttt 33505843  T
Q  115 tatattattcacttca 130  Q
    || |||||||||||||    
T  33505844 taaattattcacttca 33505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 42886921 - 42886964
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataat 241  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  42886921 aaaatattaggtattcataaatattagagcacttctaaaataat 42886964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 15429337 - 15429390
Alignment:
Q  77 tttttctccctctaaacttaaaacaatatcatgatttttatattattcacttca 130  Q
    ||||| ||||||||| ||||||||||| |||||||||| | |||||||||||||    
T  15429337 tttttatccctctaatcttaaaacaatctcatgattttaaaattattcacttca 15429390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18227374 - 18227503
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||| | ||||||||| ||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  18227374 atgggagggacgggattttaattaaatatgtgtttggttcataaggggaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaac 18227473  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||||    
T  18227474 aatatcatgatttttatattattcacttca 18227503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 20219057 - 20219168
Alignment:
Q  17 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgattttta 116  Q
    |||||| ||||||||||||| || | |||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20219057 tttaattaaatatgtgtttggttcacaaggggtgggaagggattttaaaaccaaattacttttttatccctctaatcttaaaacaatatcatgattttta 20219156  T
Q  117 tattattcactt 128  Q
     |||||||||||    
T  20219157 aattattcactt 20219168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 22113082 - 22113193
Alignment:
Q  17 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgattttta 116  Q
    |||||| ||||||||||||| || | |||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  22113082 tttaattaaatatgtgtttggttcacaaggggtgggaagggattttaaaaccaaattacttttttatccctctaatcttaaaacaatatcatgattttta 22113181  T
Q  117 tattattcactt 128  Q
     |||||||||||    
T  22113182 aattattcactt 22113193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 11455187 - 11455297
Alignment:
Q  17 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgattttta 116  Q
    ||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| | |||||||  |||||| | ||||  ||||||||    
T  11455187 tttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttat-cctctaatattaaaatagtatc--gattttta 11455283  T
Q  117 tattattcacttca 130  Q
     |||||||||||||    
T  11455284 aattattcacttca 11455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 20219243 - 20219289
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  20219243 aaaatattaggtattcataaatattagagcacttctaaaataatcta 20219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 22113268 - 22113314
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  22113268 aaaatattaggtattcataaatattagagcacttctaaaataatcta 22113314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 18227562 - 18227605
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttct 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  18227562 gttctcacataatattaggtattcataaatattagagcacttct 18227605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 35384223 - 35384347
Alignment:
Q  6 agggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatat 105  Q
    ||||||||||||||||| ||||||||||||| || |||| || ||| ||| |||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  35384223 agggaagagattttaattaaatatgtgtttggttcataatgggaggggagagattttaaaatcaaattacttttttatccctctaaccttaaaacaatat 35384322  T
Q  106 catgatttttatattattcacttca 130  Q
    |||||||||||||||||||||||||    
T  35384323 catgatttttatattattcacttca 35384347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 30411520 - 30411399
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||| ||||||||||||||| |||||| ||||||||| ||||||||| | || |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  30411520 gggaaggaagagattttaattaaatatatgtttgattcataagggaatgggatggattttaaaaccaaattacttttttatccctctagccttaaaacaa 30411421  T
Q  103 tatcatgatttttatattattc 124  Q
    ||||||||||||||||||||||    
T  30411420 tatcatgatttttatattattc 30411399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 1751359 - 1751486
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  1751359 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 1751458  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||| |||||||| ||||| |||||||    
T  1751459 tatcacgatttttaaattatccacttca 1751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 11726698 - 11726579
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  11726698 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 11726599  T
Q  103 tatcatgatttttatattat 122  Q
    ||||| |||||||| |||||    
T  11726598 tatcacgatttttaaattat 11726579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 10329828 - 10329701
Alignment:
Q  5 gagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattactt--ttttctccctctaaacttaaaacaa 102  Q
    ||||| ||||||||||||||||||| |||||| || | ||||| | | ||||||||||||||| |||||||||  |||| |||||||||  |||||| |     
T  10329828 gaggggagagattttaatcaaatatatgtttggttcacaaggggatgggagggattttaaaactaaattacttttttttatccctctaatattaaaatag 10329729  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||| |||||||| |||||||||||||    
T  10329728 tatcacgatttttaaattattcacttca 10329701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 35384406 - 35384460
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35384406 gttcgaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 35384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 37276008 - 37276135
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || ||||| ||||||||||  ||||| || | ||||| ||| ||| ||||||||||| | ||||||||| | |||||||||  |||||| |     
T  37276008 gggaggggagggatttcaatcaaatataggtttggttcacaaggggaggggagagattttaaaactacattacttttctatccctctaatattaaaatag 37276107  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||| |||||||| |||||||||||||    
T  37276108 tatcacgatttttaaattattcacttca 37276135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 30411333 - 30411279
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  30411333 gttctaacaaaatattagatatccataaatattagagcacttctaaaataatcta 30411279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 37275336 - 37275249
Alignment:
Q  43 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttttatattattcacttca 130  Q
    ||||| ||| ||| ||||||||||| ||||||||||| | |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37275336 aaggggaggggagagattttaaaactaaattacttttctatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37275249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 29008749 - 29008622
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||| |||||||||||||| ||||||||||||| ||  || ||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  29008749 gggagtgaagagattttaattaaatatgtgtttggttcgtacggggaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaa 29008650  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||| ||||||||||||||||||||||||    
T  29008649 tattatgatttttatattattcacttca 29008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 12314016 - 12313887
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    |||||||||||||||||||||| ||||||||||||| || | | ||| ||| |||||||||||||||  |||||||||||| |||||||||  ||||||     
T  12314016 atgggagggaagagattttaattaaatatgtgtttggttcacagggggaggggagggattttaaaactgaattacttttttatccctctaatattaaaat 12313917  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    | ||||| |||||||| |||||||||||||    
T  12313916 agtatcacgatttttaaattattcacttca 12313887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 47645487 - 47645612
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  47645487 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctttaatattaaaatag 47645586  T
Q  103 tatcatgatttttatattattcactt 128  Q
    ||||| |||||||| |||||||||||    
T  47645587 tatcacgatttttaaattattcactt 47645612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 1827953 - 1828080
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  1827953 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatag 1828052  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||| |||||||| ||||| |||||||    
T  1828053 tatcacgatttttaaattatccacttca 1828080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 33118696 - 33118828
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttata-----agggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaa 97  Q
    ||||||||||||||||||||||||||| |||||| || | |     |||| ||| ||||||||||||||| |||||||||| || |||||||||  ||||    
T  33118696 gggagggaagagattttaatcaaatatatgtttggttcacaagggtaggggaggggagggattttaaaactaaattactttattatccctctaatattaa 33118795  T
Q  98 aacaatatcatgatttttatattattcacttca 130  Q
    || | ||||| |||||||| |||||||||||||    
T  33118796 aatagtatcacgatttttaaattattcacttca 33118828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 44119155 - 44119040
Alignment:
Q  14 gattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgattt 113  Q
    |||||||||||||||| |||||| || | ||||| | | ||||||||||||||| ||||||||||||| ||| |||||  |||||| | ||||| |||||    
T  44119155 gattttaatcaaatatatgtttggttcagaaggggatgggagggattttaaaactaaattacttttttatccatctaatattaaaatagtatcacgattt 44119056  T
Q  114 ttatattattcacttc 129  Q
    ||| ||||||||||||    
T  44119055 ttaaattattcacttc 44119040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 29008559 - 29008509
Alignment:
Q  194 taacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29008559 taacaaaatattaggtattcataaatattagagcacttctaaaataatcta 29008509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 42027849 - 42027803
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  42027849 aaaatattaggtattcataaatattagagcacttctaaaataatcta 42027803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 40040517 - 40040553
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttcta 234  Q
    |||||||||||||||||||||||||| |||| |||||    
T  40040517 aaaatattaggtattcataaatattaaagcagttcta 40040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 37563788 - 37563915
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||||| ||||||||||||| |||||| |||||| || ||||||| ||| ||| |||||||||| |||||||||||||| ||||||||| ||||||||||    
T  37563788 gggaggaaagagattttaattaaatatatgtttggttcataaggggaggggagagattttaaaatcaaattacttttttatccctctaaccttaaaacaa 37563887  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||||||||||||||||||||||||||||    
T  37563888 tatcatgatttttatattattcacttca 37563915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 38024639 - 38024524
Alignment:
Q  15 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttt 114  Q
    |||||||| ||||||||||||| || |||| || ||| ||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  38024639 attttaattaaatatgtgtttggttcataaagggaggggagagattttaaaaccaaattacttttttatccttctaaccttaaaacaatatcatgatttt 38024540  T
Q  115 tatattattcacttca 130  Q
    ||||||||||||||||    
T  38024539 tatattattcacttca 38024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 6885143 - 6885015
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccct-ctaaacttaaaaca 101  Q
    ||||| |||| ||||||||| ||||||||||||| || ||||||||||| |||| ||||||||| |||||||| ||||| ||| | |||| |||||||||    
T  6885143 gggagagaagggattttaattaaatatgtgtttggttcataagggaaggggaggaattttaaaatcaaattacctttttatccgtgctaaccttaaaaca 6885044  T
Q  102 atatcatgatttttatattattcacttca 130  Q
    |||||||||||||||||||||||||||||    
T  6885043 atatcatgatttttatattattcacttca 6885015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 29191025 - 29191151
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||| |||| ||||||||| || |||||||||| || ||| |||| || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  29191025 gggagtgaagggattttaattaagtatgtgtttggttcatacgggaggg-gagggattttaaaaccaaattacctttttatccctctaaccttaaaacaa 29191123  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||| ||||||||||||||||||||||||    
T  29191124 tattatgatttttatattattcacttca 29191151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 55873560 - 55873687
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    |||||||  ||||||||||| ||||||||||||| || | ||||| |||  || ||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  55873560 gggaggggggagattttaattaaatatgtgtttggttcacaaggggagggaagagattttaaaaccaaattacttttttatccctctaatcttaaaataa 55873659  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    |||||||||||||| |||||||||||||    
T  55873660 tatcatgatttttaaattattcacttca 55873687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 54975830 - 54975906
Alignment:
Q  54 agggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatttttatattattcacttca 130  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54975830 agggattttaaaatcaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 54975906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 29118956 - 29119085
Alignment:
Q  1 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaac 100  Q
    ||||||||| ||||||||||||||||||| |||||| || | || |  ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||     
T  29118956 atgggaggggagagattttaatcaaatatatgtttggttcacaaagagaggggagggattttaaaactaaattacttttttatccctctaatcttaaaat 29119055  T
Q  101 aatatcatgatttttatattattcacttca 130  Q
    | ||| | |||||||| |||||||||||||    
T  29119056 agtattacgatttttaaattattcacttca 29119085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 42739707 - 42739582
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| || | ||||| ||| |||| |||||||||| ||||||||||||| |||||||||  |||||| |     
T  42739707 gggaggggagggattttaatcaaatatatgtttggttcacaaggggaggggaggaattttaaaactaaattacttttttatccctctaatattaaaatag 42739608  T
Q  103 tatcatgatttttatattattcactt 128  Q
    ||||| |||||||| |||||||||||    
T  42739607 tatcacgatttttaaattattcactt 42739582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 49284189 - 49284074
Alignment:
Q  14 gattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgattt 113  Q
    |||||||||||||||| |||||| || | |||| |||| ||| ||||||||||| ||||||||||||| |||||||||  |||||| | |||||||||||    
T  49284189 gattttaatcaaatatatgtttggttcacaagg-aaggggagagattttaaaactaaattacttttttatccctctaatattaaaatagtatcatgattt 49284091  T
Q  114 ttatattattcacttca 130  Q
    ||| |||||||||||||    
T  49284090 ttaaattattcacttca 49284074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 1921209 - 1921336
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  1921209 gggaggggagggattttaatcaaatatatgtttggttcacgagggtaggggagggattttaaaacaaaattacttttttatccctataatattaaaatag 1921308  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    |||||  ||||||| |||||||||||||    
T  1921309 tatcacaatttttaaattattcacttca 1921336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 22443858 - 22443731
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaa 102  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  22443858 gggaggggagggattttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatag 22443759  T
Q  103 tatcatgatttttatattattcacttca 130  Q
    ||| |  ||||||| |||||||||||||    
T  22443758 tattacaatttttaaattattcacttca 22443731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 29191204 - 29191258
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  29191204 gttctaacaaaatattaggtattcataaatattaaagcacttctaaaataatcta 29191258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 54975965 - 54976019
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  54975965 gttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 54976019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 41279202 - 41279317
Alignment:
Q  15 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc-tccctctaaacttaaaacaatatcatgattt 113  Q
    |||||||| |||||||| |||| || | ||||| |||  || ||||||| | ||||||| |||||||  ||||||||| |||||||||||||||||||||    
T  41279202 attttaattaaatatgtatttggttcacaaggggagggaagagattttata-ccaaattgctttttttatccctctaatcttaaaacaatatcatgattt 41279300  T
Q  114 ttatattattcacttca 130  Q
    ||| |||||||||||||    
T  41279301 ttaaattattcacttca 41279317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 47497566 - 47497690
Alignment:
Q  5 gagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaa-acttaaaacaat 103  Q
    ||||| |||||||||||| |||| | |||||| || | ||||| ||| || ||||||||| |||||||||||||||| |||||||||  |||||||| ||    
T  47497566 gaggggagagattttaattaaatgtatgtttggttcacaaggggaggtgaaggattttaacaccaaattacttttttatccctctaatccttaaaactat 47497665  T
Q  104 atcatgatttttatattattcactt 128  Q
     | |||||||| | |||||||||||    
T  47497666 cttatgattttaaaattattcactt 47497690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 38024465 - 38024414
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataat 241  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  38024465 gttctaataaaatattaggtattcataaatattagagcacttctaaaataat 38024414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 8067199 - 8067268
Alignment:
Q  48 aaggagagggattttaaaaccaaattacttttttc-tccctctaaacttaaaacaatatcatgattttta 116  Q
    |||||||||||||||||| |||| ||||||||||  ||||| ||| ||||||||||||||||||||||||    
T  8067199 aaggagagggattttaaatccaagttactttttttatccctttaatcttaaaacaatatcatgattttta 8067268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 6884958 - 6884912
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884958 aaaatattaagtattcataaatattagagcacttctaaaataatcta 6884912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 37563973 - 37564027
Alignment:
Q  190 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||    
T  37563973 gttctaataaaatattaggtattcataaatattagagcgtttctaaaataatcta 37564027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 39593332 - 39593207
Alignment:
Q  3 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaa-acttaaaaca 101  Q
    ||||||| |||||||||||| |||| | |||||| || | ||||| ||| ||||| |||||| |||||||||| ||||| ||| |||||  ||||||||     
T  39593332 gggaggggagagattttaattaaatgtatgtttggttcagaaggggaggtgaggg-ttttaacaccaaattacctttttatccttctaatccttaaaact 39593234  T
Q  102 atatcatgatttttatattattcactt 128  Q
    || |||||||||| | ||||| |||||    
T  39593233 atctcatgattttaaaattatccactt 39593207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 55873758 - 55873804
Alignment:
Q  198 aaaatattaggtattcataaatattagagcacttctagaataatcta 244  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||||    
T  55873758 aaaatattaggtattcataaatattatagcacttctaagataatcta 55873804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 28057 - 28174
Alignment:
Q  11 agagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatga 110  Q
    ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| ||| |||||  |||||| | ||||||||    
T  28057 agagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccatctaatattaaaatagtatcatga 28156  T
Q  111 tttttatattattcactt 128  Q
    ||||||  ||||||||||    
T  28157 tttttaacttattcactt 28174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 46485600 - 46485484
Alignment:
Q  14 gattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgattt 113  Q
    |||||||||||||||  |||||| || | ||||| |||  |||||||||||||| ||||||||||||| |||||||||  |||||||| || ||  ||||    
T  46485600 gattttaatcaaatacatgtttggttcacaaggggagggcagggattttaaaactaaattacttttttatccctctaatattaaaacagtaacacaattt 46485501  T
Q  114 ttatattattcacttca 130  Q
    ||| |||||||||||||    
T  46485500 ttaaattattcacttca 46485484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 7311392 - 7311490
Alignment:
Q  13 agattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaacttaaaacaatatcatgatt 112  Q
    |||||||||| |||||| |||||| | || ||||| ||  ||| |||||||||| |||||||   |||| ||||||||| ||||||||||| ||||||||    
T  7311392 agattttaattaaatatatgtttggtgtagaaggggagacgagagattttaaaatcaaatta---ttttatccctctaatcttaaaacaatctcatgatt 7311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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