View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_322 (Length: 247)
Name: NF10829A_low_322
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_322 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 31609815 - 31609927
Alignment:
| Q |
135 |
tgaaaaaggtccacatccaagttccaattccctagcctctaaagcccacaccgtcctcccatttttgtgaatttcttattgcaccctccaattggttgtg |
234 |
Q |
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| T |
31609815 |
tgaaaaaggtccacatccaagttccaattccctagcctctgaagcccacaccgccctcccatttttgtgaatttcttattgcaccctccaattggttgtg |
31609914 |
T |
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| Q |
235 |
caccctacttttt |
247 |
Q |
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| T |
31609915 |
caccctacttttt |
31609927 |
T |
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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 18062807 - 18062919
Alignment:
| Q |
22 |
taatatttattccgatatactttttccgattactatatccttatattctaatgatatatcatgaatatagatgacatattcttatattctaaggatatgt |
121 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18062807 |
taatatttattccgatatactttttccggttactatatccttatattctaaggatatatcatgaatatacatgacatattcttatattctaaggatatgt |
18062906 |
T |
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| Q |
122 |
catgaatatccat |
134 |
Q |
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| T |
18062907 |
catgaatatccat |
18062919 |
T |
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