View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_325 (Length: 247)

Name: NF10829A_low_325
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_325
NF10829A_low_325
[»] chr5 (7 HSPs)
chr5 (1-243)||(29013081-29013324)
chr5 (14-198)||(29365815-29365999)
chr5 (70-229)||(24085110-24085269)
chr5 (148-243)||(29014953-29015048)
chr5 (158-214)||(11095406-11095462)
chr5 (165-215)||(10391444-10391494)
chr5 (172-212)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (161-215)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (166-217)||(24193632-24193683)
chr4 (162-215)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (165-215)||(41809163-41809213)
chr2 (166-214)||(787435-787483)
chr2 (159-215)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (162-215)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29013324 - 29013081
Alignment:
Q  1 tgtaaattggtggttcataactttcatatagattatggaaaaa-tgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattc 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  29013324 tgtaaattgttggttcataactttcatatagattatggaaaaaatgtttctttttgtagcttgtttttttgtttctcttacgtgagtgaggtttttattc 29013225  T
Q  100 aatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctgg 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29013224 aatatgctctattgggttcaattatttagtggaaaagttgaaaactttgatttaaagtttaaggtctgtttggattggattattgaagcttatctgctgg 29013125  T
Q  200 cataaacacttgtgagttatgaagtacgaatacaaacaccaaac 243  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  29013124 cataaacacttgtgagttatgaagtacgaacacaaacaccaaac 29013081  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 29365999 - 29365815
Alignment:
Q  14 ttcataactttcatatagattatgg-aaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatctatt 112  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||       |||||||| | |||||||| |||||||||||||||| ||||||    
T  29365999 ttcataaccttcatatagattatgggaaaaatgtttctttttgtagcttgtttttttgtttctctcatgtgagtgaagtttttattcaatatgctctatt 29365900  T
Q  113 gggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctg 198  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  29365899 gggttcaactatttagtggaaaaattgaaaactttgattg-aagtttaaggtccatttggattggattattgaggcttatctgctg 29365815  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  70 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 169  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  170 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 229  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  148 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 243  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  158 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 214  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  165 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 215  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  172 gattggattattgaagcttatctgctggcataaacacttgt 212  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  161 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 215  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  166 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 217  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  162 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 215  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  165 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 215  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  166 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 214  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  159 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 215  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  162 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 215  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

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