View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_336 (Length: 246)
Name: NF10829A_low_336
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_336 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40924845 - 40925069
Alignment:
| Q |
1 |
tcctcaaagaaatgtacttgttgttacctgcattgtgtcttcattggactcaatcttgctccggcggtagtgcctgcacgacgttcaactcagtgagggg |
100 |
Q |
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| T |
40924845 |
tcctcaaagaaatgtacttgttgttacctgtattgtgtcttcattggactcaatcttgctccggcggtagtgcctgcacgacgt-caactcagtgagggg |
40924943 |
T |
|
| Q |
101 |
caaaggtgccaccgctgcccgtggtggtttgggaggtgaacgcagccattttaagaaagttggactgtatgccaagatcaatatcactgcaatagcaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40924944 |
caaaggtgccaccgctgcccgtggtggtttgggaggtgaacgcagccattttaagaaagttggaccgtatgccaagatcaatatcactgcaatagcaacc |
40925043 |
T |
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| Q |
201 |
gcaacaatggaagcaaacagtataag |
226 |
Q |
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||||||||||||||||||||||||| |
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| T |
40925044 |
acaacaatggaagcaaacagtataag |
40925069 |
T |
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