View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_34 (Length: 449)
Name: NF10829A_low_34
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 25566295 - 25565858
Alignment:
| Q |
11 |
cacagaccacaatccaatgttccaatgtttattgttcaaactagacaaactagatttggtttatccattccatttgcaaacaataacatcatcaccacat |
110 |
Q |
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| T |
25566295 |
cacacaccacaatccaatgttccaatgtttattgttcaaactagacaaactagatttggtttatccgttccatttgcaaacaataacatcatcaccacat |
25566196 |
T |
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| Q |
111 |
gacacaatattacatccgtggatatgcctagcatggcttcccctcttctgctcccactttgtaagtcctttcactttctcttttcctcactatccaaaaa |
210 |
Q |
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| T |
25566195 |
gacacaatattacatccttggatatgcctagcatggcttcccctcttctgcttccactttgtaagtcctttcactttctctcttcctcactgtccaaaaa |
25566096 |
T |
|
| Q |
211 |
tgcataatattgtgtgattgctgtaatcaa-------gttaatttatatttgatttgttccnnnnnnnnnnatagattcgacttgtggtaaaattccttc |
303 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
25566095 |
tgcataatattgtgtgattgctgtaatcaagttcactgttaatttatatttgatttgttcc--ttttttttatagattctacttgtggtaaaattccttc |
25565998 |
T |
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| Q |
304 |
tcttactgcttctcaaagcatttctgttgagaaacttagaagatttgctcttaaagtgaaatccacagagacaagggaatgcactgctaatgatattttt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
25565997 |
tcttactgcttctcaaagcatttctgttgagaaacttagaagatttgctcttaaagtcaagtccacagagacaagggaatgcactgctaatgatattttt |
25565898 |
T |
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| Q |
404 |
aataccaattcacgtagagactttcttggattagcattag |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25565897 |
aataccaattcacgtagagactttcttggattagcattag |
25565858 |
T |
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