View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_340 (Length: 245)
Name: NF10829A_low_340
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_340 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 5620619 - 5620862
Alignment:
| Q |
8 |
gtatttcttatgcagtgctgctgggccacataccatagttaatggtaaagaagttgtaaattttgcttcagcaaactatcttgggcttataggtcatcaa |
107 |
Q |
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| T |
5620619 |
gtatttcttatgcagtgctgctgggccacataccatagttaatggtaaagaagttgtaaattttgcttcagcaaactatcttgggcttataggtcatcaa |
5620718 |
T |
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| Q |
108 |
aagttacttgtaagttgtaaggaaatgatcccatatcaataaagtctttttgttgggagtgttctgatgc------------tttactttgtcttgtagg |
195 |
Q |
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| T |
5620719 |
aagttacttgtaagttgtaaggaaatgatcccatatcaataaagtctttttgttgggagtggtctgatgcagtgactctatatttactttgtcttgtagg |
5620818 |
T |
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| Q |
196 |
actcatgttcatctgctttagagaaatatggtgttggttcttgt |
239 |
Q |
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| T |
5620819 |
actcatgttcatctgctttagagaaatatggtgttggttcttgt |
5620862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 30636114 - 30635973
Alignment:
| Q |
10 |
atttcttatgcagtgctgctgggccacataccatagttaatggtaaagaagttgtaaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
109 |
Q |
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| T |
30636114 |
atttcttatgcagtgctgctggcccacataccatagttaatggtaaagaagttatcaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
30636015 |
T |
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| Q |
110 |
gttacttgtaagttgtaaggaaatgatcccatatcaataaagtcttttt |
158 |
Q |
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| T |
30636014 |
gttacttg-------taaggacatgatcccatatcaataaattcttttt |
30635973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 30635940 - 30635883
Alignment:
| Q |
178 |
tttactttgtcttgtaggactcatgttcatctgctttagagaaatatggtgttggttc |
235 |
Q |
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|||||||| | |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30635940 |
tttactttatattgtaggactcatgcacttctgctttagagaaatatggtgttggttc |
30635883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 21424914 - 21424803
Alignment:
| Q |
10 |
atttcttatgcagtgctgctgggccacataccatagttaatggtaaagaagttgtaaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
109 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21424914 |
atttcttatgcagtgctgctggccctcataccatagttaatggtaaagaagttatcaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
21424815 |
T |
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| Q |
110 |
gttacttgtaag |
121 |
Q |
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|||||||||||| |
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| T |
21424814 |
gttacttgtaag |
21424803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 21424740 - 21424683
Alignment:
| Q |
178 |
tttactttgtcttgtaggactcatgttcatctgctttagagaaatatggtgttggttc |
235 |
Q |
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|||||||| | |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
21424740 |
tttactttatattgtaggactcatgcacttctgctttagagaaatatggtgttggttc |
21424683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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