View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_349 (Length: 243)
Name: NF10829A_low_349
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_349 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 45260094 - 45260224
Alignment:
| Q |
27 |
ccttttaaaatcttcacgatggatcattaggacaaaagttagcaagattcatttttattaaacattcactaatgtaattaattacatatttaaattatgt |
126 |
Q |
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| T |
45260094 |
ccttttaaaatcttcacgatgggtcattaggacaaaagttagcgagattcatttttattaaacattcactaatgtaattaattacatatttaaattatgt |
45260193 |
T |
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| Q |
127 |
taatcgtttcaattattgttgaaatttgtta |
157 |
Q |
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| T |
45260194 |
taatcgttccaattattgttgaaatttgtta |
45260224 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 45260519 - 45260606
Alignment:
| Q |
156 |
tatcatttattcacatgatatcacttgttataatcctactatcctagtaacatttctttaaagttgnnnnnnntaaaataaattaatt |
243 |
Q |
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| T |
45260519 |
tatcatttattcacatgatatcacctgttataatcctactatcctagtaacatttctttaaagttgaaaaaaataaaataaattaatt |
45260606 |
T |
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