View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_350 (Length: 243)
Name: NF10829A_low_350
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_350 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 42744070 - 42743859
Alignment:
| Q |
12 |
atgaagggaacatagagtggtttacacagaacactggctttatgtttgagcaagcaccttatttcaatgcccttatggtttttattgaggtaaactttat |
111 |
Q |
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| T |
42744070 |
atgaagggaacatagagtggtttacacaaaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggtaaactttat |
42743971 |
T |
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| Q |
112 |
tgtcttggattctctacctcttctgcattgtctttttgtctcacatcctagaaaacattttagtacatgtctggattaccggtgaaattgacaacaaaat |
211 |
Q |
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| T |
42743970 |
tgtcttggattctctacctcttctgcattgtctttttgtctcatatcctagacaacattttagtacatgtctggattaacgttgaaattgacaacaaaat |
42743871 |
T |
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| Q |
212 |
cgcagatgattt |
223 |
Q |
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||||| |||||| |
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| T |
42743870 |
cgcagttgattt |
42743859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 42748794 - 42748704
Alignment:
| Q |
12 |
atgaagggaacatagagtggtttacacagaacactggctttatgtttgagcaagcaccttatttcaatgcccttatggtttttattgaggt |
102 |
Q |
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|||||||| ||||| | ||||| |||| ||||||||||||||||| || |||||| |||||||||||| || |||||||||||||||| |
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| T |
42748794 |
atgaaggggacatacaatggttcgcacaaaacactggctttatgttcgaaatagcaccctatttcaatgccattttggtttttattgaggt |
42748704 |
T |
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