View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_359 (Length: 241)

Name: NF10829A_low_359
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_359
NF10829A_low_359
[»] chr1 (4 HSPs)
chr1 (26-221)||(7386418-7386613)
chr1 (62-198)||(19991215-19991350)
chr1 (115-199)||(19322649-19322733)
chr1 (26-56)||(19322751-19322781)
[»] chr5 (3 HSPs)
chr5 (26-222)||(4925203-4925404)
chr5 (62-222)||(35205787-35205947)
chr5 (81-222)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (62-220)||(52314493-52314651)
chr3 (62-218)||(53464903-53465059)
chr3 (97-194)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (65-221)||(23563558-23563714)
chr4 (93-221)||(48265287-48265415)
[»] chr2 (2 HSPs)
chr2 (127-223)||(39375508-39375604)
chr2 (30-68)||(39375627-39375665)
[»] chr8 (1 HSPs)
chr8 (106-223)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (99-220)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 7386418 - 7386613
Alignment:
Q  26 atactattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaact 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7386418 atactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaact 7386517  T
Q  126 actcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 221  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386518 actcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  62 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 161  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  162 cacgagagcattggttagtgtgataccacccatatgg 198  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  115 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 199  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 19322781 - 19322751
Alignment:
Q  26 atactattaattaaaagaaataaaactcaaa 56  Q
    |||||||||||||||||||||||||||||||    
T  19322781 atactattaattaaaagaaataaaactcaaa 19322751  T

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Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 4925203 - 4925404
Alignment:
Q  26 atactattaattaaaagaaataaaactcaaagtatt-----------acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgt 114  Q
    ||||||||||||||||||||||| ||||||||||||           | ||||||||||||||||      |||||||||||||||||||| ||||||||    
T  4925203 atactattaattaaaagaaataatactcaaagtattctaaaatatgtataaaatctaacaattac------aggaacgtagtaatgcattgttaccatgt 4925296  T
Q  115 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatg 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4925297 atagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacagacgatgcgtatg 4925396  T
Q  215 ctcttagt 222  Q
    ||||||||    
T  4925397 ctcttagt 4925404  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 35205787 - 35205947
Alignment:
Q  62 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 161  Q
    ||||||||  |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  162 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagt 222  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||||| |||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  81 ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 180  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  181 gtgataccacccatatggacagacgatgtgtatgctcttagt 222  Q
    |||||||||||||||||  |||  |||||| |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  62 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 161  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  162 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctctta 220  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  62 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 161  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  162 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 218  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
Q  97 aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat 194  Q
    ||||||||||||| |||  | ||||| |||||||  ||||| |||||||||| | ||||||||||| | || ||||| || |||||  ||||||||||    
T  1995809 aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat 1995906  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  65 aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 164  Q
    |||||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  165 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 221  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 48265287 - 48265415
Alignment:
Q  93 tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 192  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  193 atatggacagacgatgtgtatgctcttag 221  Q
    |||||  ||| ||||||| ||| ||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttag 48265415  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  127 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagtg 223  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 39375665 - 39375627
Alignment:
Q  30 tattaattaaaagaaataaaactcaaagtattacaaaat 68  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39375665 tattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  106 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 205  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  206 atgtgtatgctcttagtg 223  Q
    ||||||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 45888823 - 45888944
Alignment:
Q  99 tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg 198  Q
    |||||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |    
T  45888823 tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg 45888922  T
Q  199 acagacgatgtgtatgctctta 220  Q
    || |||||||||||||||||||    
T  45888923 accgacgatgtgtatgctctta 45888944  T

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