View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_361 (Length: 241)
Name: NF10829A_low_361
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_361 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 54396536 - 54396756
Alignment:
| Q |
21 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396536 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt |
54396635 |
T |
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| Q |
121 |
tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcacccg |
220 |
Q |
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| T |
54396636 |
tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccag |
54396735 |
T |
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| Q |
221 |
catctttcgtagcttgacgtt |
241 |
Q |
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||||||||||||||||||||| |
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| T |
54396736 |
catctttcgtagcttgacgtt |
54396756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 23587788 - 23587568
Alignment:
| Q |
21 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt |
120 |
Q |
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||||||||| |||||||| || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| || | || |||||||| ||||||| |
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| T |
23587788 |
atcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttc |
23587689 |
T |
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| Q |
121 |
tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcacccg |
220 |
Q |
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| T |
23587688 |
tcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccgg |
23587589 |
T |
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| Q |
221 |
catctttcgtagcttgacgtt |
241 |
Q |
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||||||| ||||||||||||| |
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| T |
23587588 |
catcttttgtagcttgacgtt |
23587568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 23596640 - 23596420
Alignment:
| Q |
21 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt |
120 |
Q |
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||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |||||||| ||||||||||| || | || |||||||| ||||||| |
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| T |
23596640 |
atcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttc |
23596541 |
T |
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| Q |
121 |
tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcacccg |
220 |
Q |
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|| || | || | |||||||||||| | |||||||||||| || |||||||| ||||| |||||||| |||| |||||| | || ||||| |||| | |
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| T |
23596540 |
tcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccag |
23596441 |
T |
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| Q |
221 |
catctttcgtagcttgacgtt |
241 |
Q |
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|||| || ||||||||||||| |
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| T |
23596440 |
catccttagtagcttgacgtt |
23596420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 8017468 - 8017385
Alignment:
| Q |
21 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaa |
104 |
Q |
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||||||||||||||| || ||||| || || || |||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
8017468 |
atcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaa |
8017385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 8102780 - 8102998
Alignment:
| Q |
21 |
atcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgt |
120 |
Q |
| |
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|||||| |||||||| || ||||| || || || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| || | |||||||| |
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| T |
8102780 |
atcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttc |
8102879 |
T |
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| Q |
121 |
tcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcacccg |
220 |
Q |
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|| || || | || || || || | ||| || ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| | ||| |||| | |
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| T |
8102880 |
tcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccag |
8102979 |
T |
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| Q |
221 |
catctttcgtagcttgacg |
239 |
Q |
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| T |
8102980 |
catctttagttgcttgacg |
8102998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 39985874 - 39985926
Alignment:
| Q |
136 |
gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataat |
188 |
Q |
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|||||||| || | |||||||||||| ||||||||||| |||||||| ||||| |
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| T |
39985874 |
gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataat |
39985926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
| Q |
73 |
gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag |
172 |
Q |
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||||||||||| |||||||| || | ||||| | |||||| |||| || |||| |||| | |||||| ||||||||||||||||| ||||| |||| |
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| T |
5445754 |
gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag |
5445655 |
T |
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| Q |
173 |
taggctcattaataatcctcaacacattcaaacc |
206 |
Q |
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| T |
5445654 |
taggctcgttgatgatcctcatcacattaaaacc |
5445621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 17716621 - 17716576
Alignment:
| Q |
148 |
aaaccataagcaattgcagcagcagtaggctcattaataatcctca |
193 |
Q |
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|||||||||||||| || |||||||| |||||||||||||| |||| |
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| T |
17716621 |
aaaccataagcaatggctgcagcagtgggctcattaataattctca |
17716576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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