View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10829A_low_370 (Length: 239)

Name: NF10829A_low_370
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10829A_low_370
NF10829A_low_370
[»] chr8 (11 HSPs)
chr8 (89-236)||(42346454-42346601)
chr8 (89-236)||(28090664-28090811)
chr8 (96-236)||(42345173-42345313)
chr8 (95-226)||(28091277-28091408)
chr8 (119-236)||(44834715-44834832)
chr8 (120-236)||(44835354-44835470)
chr8 (10-58)||(7228026-7228074)
chr8 (173-236)||(36936396-36936459)
chr8 (173-236)||(36936675-36936738)
chr8 (57-91)||(42345164-42345198)
chr8 (165-236)||(30272925-30272997)
[»] chr2 (11 HSPs)
chr2 (89-236)||(16649711-16649858)
chr2 (95-236)||(37157529-37157670)
chr2 (89-203)||(37158137-37158251)
chr2 (95-201)||(16650386-16650492)
chr2 (89-199)||(37543302-37543412)
chr2 (120-236)||(19521348-19521464)
chr2 (119-236)||(19521840-19521958)
chr2 (89-191)||(37543755-37543857)
chr2 (151-236)||(4478858-4478943)
chr2 (96-208)||(5005497-5005609)
chr2 (57-91)||(37158254-37158288)
[»] chr4 (8 HSPs)
chr4 (89-221)||(46707906-46708038)
chr4 (89-236)||(46707401-46707548)
chr4 (119-236)||(30478808-30478925)
chr4 (119-236)||(48013324-48013441)
chr4 (120-236)||(30478316-30478432)
chr4 (122-236)||(48013820-48013934)
chr4 (117-236)||(7907525-7907643)
chr4 (129-205)||(231983-232059)
[»] chr5 (11 HSPs)
chr5 (82-236)||(7625910-7626064)
chr5 (120-236)||(26688173-26688288)
chr5 (120-236)||(26957904-26958019)
chr5 (119-236)||(26688664-26688782)
chr5 (119-236)||(26958395-26958513)
chr5 (116-236)||(7625480-7625599)
chr5 (128-236)||(14553674-14553782)
chr5 (120-204)||(14553896-14553980)
chr5 (89-213)||(27122847-27122970)
chr5 (129-216)||(16690324-16690411)
chr5 (55-91)||(14553663-14553699)
[»] chr6 (4 HSPs)
chr6 (116-236)||(14337478-14337598)
chr6 (82-206)||(14336650-14336774)
chr6 (120-236)||(7159266-7159382)
chr6 (126-236)||(7158442-7158552)
[»] chr3 (11 HSPs)
chr3 (89-203)||(43637456-43637569)
chr3 (96-236)||(43637980-43638119)
chr3 (119-236)||(25329882-25329999)
chr3 (120-232)||(30847206-30847318)
chr3 (120-236)||(42179105-42179221)
chr3 (120-208)||(25329418-25329506)
chr3 (126-236)||(42179923-42180033)
chr3 (171-236)||(30847829-30847894)
chr3 (96-163)||(26836425-26836492)
chr3 (59-91)||(43638094-43638126)
chr3 (150-186)||(44021382-44021418)
[»] chr1 (4 HSPs)
chr1 (129-236)||(45811228-45811335)
chr1 (127-236)||(45810730-45810839)
chr1 (89-208)||(30780878-30780997)
chr1 (151-236)||(194657-194742)
[»] scaffold0129 (1 HSPs)
scaffold0129 (89-208)||(43112-43231)
[»] chr7 (2 HSPs)
chr7 (89-204)||(30513679-30513794)
chr7 (151-236)||(41195322-41195407)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 42346454 - 42346601
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  42346454 tttgtgttggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttg 42346553  T
Q  189 agatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    |||||||||||||||||||| ||||||| |||| |||| |||||||||    
T  42346554 agatttactttcccatgatggaaaagaagtttgctttcccaaattaaa 42346601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 28090811 - 28090664
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  28090811 tttgtgttggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttg 28090712  T
Q  189 agatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||||||||  |||||| |||  |||| |||||||||    
T  28090711 agatttactttcccatgatgggaaagaagtttactttcccaaattaaa 28090664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 42345313 - 42345173
Alignment:
Q  96 tggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagattta 195  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  42345313 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatgattgagattta 42345214  T
Q  196 ctttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    |||||||||||||  |||||| |||  |||| |||||||||    
T  42345213 ctttcccatgatgggaaagaagtttactttcccaaattaaa 42345173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 28091277 - 28091408
Alignment:
Q  95 ttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagattt 194  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28091277 ttggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagattt 28091376  T
Q  195 actttcccatgatgcaaaagaaatttgatttc 226  Q
    ||||||| ||||||  |||||| |||| ||||    
T  28091377 actttcctatgatgggaaagaagtttgctttc 28091408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 44834832 - 44834715
Alignment:
Q  119 gataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||   || ||| |    
T  44834832 gataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgataggaaggaagt 44834733  T
Q  219 ttgatttctcaaattaaa 236  Q
    ||| |||| |||||||||    
T  44834732 ttgttttcccaaattaaa 44834715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 44835354 - 44835470
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||  |||| ||| |||||||||||||||||||||||||||||  |||||| ||    
T  44835354 ataaagggaaaaaaatataatgtagaaagactatgataaaatcaatgtttctcttaaatttaatggttgagatttactttcccatgatgggaaagaagtt 44835453  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||  |||||||||    
T  44835454 tgcttttccaaattaaa 44835470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 7228026 - 7228074
Alignment:
Q  10 agaatatgtaggttttatatagttctttttataatagggttgataagat 58  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  7228026 agaatatataggttttatttagttctttttataatagggttgataagat 7228074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 36936396 - 36936459
Alignment:
Q  173 ttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||| | ||||||||||||||||||  ||| || |||| |||| |||||||||    
T  36936396 ttgaatctaatggttaaaatttactttcccatgatgggaaaaaagtttgctttcccaaattaaa 36936459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 36936675 - 36936738
Alignment:
Q  173 ttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||| | ||||||||||||||||||  ||| || |||| |||| |||||||||    
T  36936675 ttgaatctaatggttaaaatttactttcccatgatgggaaaaaagtttgctttcccaaattaaa 36936738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 42345164 - 42345198
Alignment:
Q  57 atggtgctatttaatttgggaaagtaaacttcttt 91  Q
    ||||||| |||||||||||||||||||||||||||    
T  42345164 atggtgccatttaatttgggaaagtaaacttcttt 42345198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 30272925 - 30272997
Alignment:
Q  165 tattcttc-ttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    |||||||| ||||||||||||||| | | ||||||||||||||||  ||| || |||| |||| |||||||||    
T  30272925 tattcttcattgaatctaatggttaaaacttactttcccatgatgggaaaaaagtttgctttcccaaattaaa 30272997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 16649858 - 16649711
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  16649858 tttgtgttggttgatgattgtaaggttgaagataaaggggaaaaaatataatatagaaagactatgataaaatcaatgttcctcttgaatctaatggttg 16649759  T
Q  189 agatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||||||||  |||||| |||  |||| |||||||||    
T  16649758 agatttactttcccatgatgggaaagaagtttactttcccaaattaaa 16649711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 37157670 - 37157529
Alignment:
Q  95 ttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagattt 194  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  37157670 ttggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgtttctcttgaatctaatggttgagattt 37157571  T
Q  195 actttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||| ||||||  |||||| |||| |||| |||||||||    
T  37157570 actttcctatgatgggaaagaagtttgctttcccaaattaaa 37157529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 37158137 - 37158251
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  37158137 tttgtgttggttgatgattgtaaggttgaagataaagggaaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttg 37158236  T
Q  189 agatttactttccca 203  Q
    |||||||||||||||    
T  37158237 agatttactttccca 37158251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 16650386 - 16650492
Alignment:
Q  95 ttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagattt 194  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16650386 ttggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagacagactatgataaaatcaatattcctcttgaatctaatggttgagattt 16650485  T
Q  195 actttcc 201  Q
    |||||||    
T  16650486 actttcc 16650492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 37543412 - 37543302
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||||||||||| ||| ||||||||||||||||||    
T  37543412 tttgtgttggttgatgattgtaaggttgaagataaaggggaaaaaatataatttaaaaagactaggataaaatcaatgttcatcttgaatctaatggttg 37543313  T
Q  189 agatttacttt 199  Q
    |||||||||||    
T  37543312 agatttacttt 37543302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 19521464 - 19521348
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  19521464 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttaagatttactttcccatgatgggaaagaagtt 19521365  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||| |||||||||    
T  19521364 tgctttcccaaattaaa 19521348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 19521840 - 19521958
Alignment:
Q  119 gataaaggggaaaa-aatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaa 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  ||||||     
T  19521840 gataaaggggaaaaaaatataatgtagaaagactatgataaaatcaatattcctcttgaatctaatgattgagatttactttcccatgatgggaaagaag 19521939  T
Q  218 tttgatttctcaaattaaa 236  Q
    |||| |||| |||||||||    
T  19521940 tttgctttcccaaattaaa 19521958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 37543755 - 37543857
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  37543755 tttgtgttggttgatgattgtaaggttgaaaataaagggaaaaaaatataatgtagaaagactatgataaaatcaaatttcctcttgaatctaatggttg 37543854  T
Q  189 aga 191  Q
    |||    
T  37543855 aga 37543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 4478943 - 4478858
Alignment:
Q  151 tatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||  |||||| |||| |||| |||||||||    
T  4478943 tatgataaaatcaatgttcctcttgaatataatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaa 4478858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 5005609 - 5005497
Alignment:
Q  96 tggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagattta 195  Q
    |||||||| |||||||| ||||||  ||||| |||||||| || | |||| |||||||| |||||||| | | | ||||  ||| |||||||  |||||     
T  5005609 tggttgataattgtaaggttgaaggcaaaggagaaaaaatttagtatagagagactatggtaaaatcagtgtccctctttgatccaatggttatgatttg 5005510  T
Q  196 ctttcccatgatg 208  Q
    |||||||||||||    
T  5005509 ctttcccatgatg 5005497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 37158288 - 37158254
Alignment:
Q  57 atggtgctatttaatttgggaaagtaaacttcttt 91  Q
    ||||||| |||||||||||||||||||||||||||    
T  37158288 atggtgccatttaatttgggaaagtaaacttcttt 37158254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 46707906 - 46708038
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||    
T  46707906 tttgtgttggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatgattg 46708005  T
Q  189 agatttactttcccatgatgcaaaagaaatttg 221  Q
    ||||||||||||||||||||  |||||| ||||    
T  46708006 agatttactttcccatgatgagaaagaagtttg 46708038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 46707548 - 46707401
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  46707548 tttgtgttgattgatgattgtatggttgaagataaaagggaaaaaatataatgcagaaagactatgataaaatcaatgttcctcttgaatctaatggttg 46707449  T
Q  189 agatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    |||||||||||||||||||   ||| || |||  ||||||||||||||    
T  46707448 agatttactttcccatgataggaaaaaagtttactttctcaaattaaa 46707401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 30478808 - 30478925
Alignment:
Q  119 gataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaat 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||| |    
T  30478808 gataaaggggaaaaaatataatgtagaaggactatgataaaatcaatgttcctcttgaatctaatgattgagatttactttcccatgatggaaaagaagt 30478907  T
Q  219 ttgatttctcaaattaaa 236  Q
    ||| |||| |||||||||    
T  30478908 ttgctttcccaaattaaa 30478925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 48013441 - 48013324
Alignment:
Q  119 gataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||  |||||| |    
T  48013441 gataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggatgagatttactttcccatgatgggaaagaagt 48013342  T
Q  219 ttgatttctcaaattaaa 236  Q
    ||| |||| |||||||||    
T  48013341 ttgctttcccaaattaaa 48013324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 30478432 - 30478316
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||  |||||| ||    
T  30478432 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatgattgagatttactttcccatgatgggaaagaagtt 30478333  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||| |||||||||    
T  30478332 tgctttcccaaattaaa 30478316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 48013820 - 48013934
Alignment:
Q  122 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttg 221  Q
    |||||||||||||||||||| |||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||  |||||| ||||    
T  48013820 aaaggggaaaaaatataatgcagaaagaccatgataaagtcaatgttcctcttgaatctaatggttgagatttacttttccatgatgggaaagaagtttg 48013919  T
Q  222 atttctcaaattaaa 236  Q
     ||||||||||||||    
T  48013920 ctttctcaaattaaa 48013934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 7907525 - 7907643
Alignment:
Q  117 aagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaa 216  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||  |||||||||||| |||||||||||||||| | |||||| |||||||    
T  7907525 aagataaaggg-aaaaaatataatgtagaaagactataataaaatcaatgtttctcttgaatctaacggttgagatttacttttcaatgatgaaaaagaa 7907623  T
Q  217 atttgatttctcaaattaaa 236  Q
     |||| |||| |||||||||    
T  7907624 gtttgctttcccaaattaaa 7907643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 231983 - 232059
Alignment:
Q  129 aaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatg 205  Q
    ||||||| || ||| || |||||||||||| |||||| ||| || |  ||||||||||| | |||||||||||||||    
T  231983 aaaaaatttagtgtggagagactatgataagatcaatgttcctcatttatctaatggttaaaatttactttcccatg 232059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 7625910 - 7626064
Alignment:
Q  82 aaacttctttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatcta 181  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||    
T  7625910 aaacttatttgtgttcgttgatgattgtaaggttgaagataaaggggaaaaaatataatgtaaaaagactatgataaaatcaatgttcctcttgaatata 7626009  T
Q  182 atggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||| |||||||||||||||||||||||  |||||| |||| |||  |||||||||    
T  7626010 atgattgagatttactttcccatgatgggaaagaagtttgcttttccaaattaaa 7626064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 26688288 - 26688173
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||| ||    
T  26688288 ataaaggggaaaaa-tataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtt 26688190  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||| |||||||||    
T  26688189 tgctttcccaaattaaa 26688173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 26958019 - 26957904
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||| ||    
T  26958019 ataaaggggaaaaa-tataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtt 26957921  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||| |||||||||    
T  26957920 tgctttcccaaattaaa 26957904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 26688664 - 26688782
Alignment:
Q  119 gataaaggggaaaa-aatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaa 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||||||     
T  26688664 gataaaggggaaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaag 26688763  T
Q  218 tttgatttctcaaattaaa 236  Q
    |||| |||  |||||||||    
T  26688764 tttgcttttccaaattaaa 26688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 26958395 - 26958513
Alignment:
Q  119 gataaaggggaaaa-aatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaa 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||||||     
T  26958395 gataaaggggaaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaag 26958494  T
Q  218 tttgatttctcaaattaaa 236  Q
    |||| |||  |||||||||    
T  26958495 tttgcttttccaaattaaa 26958513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 7625599 - 7625480
Alignment:
Q  116 gaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaaga 215  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||  |||||    
T  7625599 gaagataaaggggaaaaa-tataatgtagaaagactataataaaatcaatgttcctcttgaatttaatggttgagatttactttcccatgatgggaaaga 7625501  T
Q  216 aatttgatttctcaaattaaa 236  Q
    | |||| |||| |||||||||    
T  7625500 agtttgctttcccaaattaaa 7625480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 14553782 - 14553674
Alignment:
Q  128 gaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttct 227  Q
    |||||||||||||||| ||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||||     
T  14553782 gaaaaaatataatgtacaaagactatgataaaatcattgttcctcttaaatctaatggttgagatttactttcccatgatggaaaagaagtttgctttcc 14553683  T
Q  228 caaattaaa 236  Q
    |||||||||    
T  14553682 caaattaaa 14553674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 14553896 - 14553980
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccat 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||    
T  14553896 ataaaggggaaaaaatataatgtaaaaagactatgataaaatcattgttcctcttaaatctaatggttgagatttactttcccat 14553980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 27122970 - 27122847
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| || |||||| | ||||| ||||||||||| |||  ||| ||| ||||||||     
T  27122970 tttgtgttggttgatgattgtaaggttgaagataaaggggaataaatttagtgtagagaaactataataaaatcaatgttc-cctttaatttaatggtta 27122872  T
Q  189 agatttactttcccatgatgcaaaa 213  Q
    ||||||||||| |||| ||| ||||    
T  27122871 agatttacttttccataatggaaaa 27122847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 16690324 - 16690411
Alignment:
Q  129 aaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaa 216  Q
    |||||||||||||| || |||||| ||||| ||| || |||||  |  ||||||||||| | ||||||||||||||| || |||||||    
T  16690324 aaaaaatataatgtggagagactacgataagatcgatgttcttaatttatctaatggttaaaatttactttcccatggtggaaaagaa 16690411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 14553663 - 14553699
Alignment:
Q  55 agatggtgctatttaatttgggaaagtaaacttcttt 91  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  14553663 agatggtgccatttaatttgggaaagcaaacttcttt 14553699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 14337478 - 14337598
Alignment:
Q  116 gaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaaga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||    
T  14337478 gaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaaga 14337577  T
Q  216 aatttgatttctcaaattaaa 236  Q
    | |||| |||| |||||||||    
T  14337578 agtttgctttcccaaattaaa 14337598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 14336774 - 14336650
Alignment:
Q  82 aaacttctttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatcta 181  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||| |||||||| ||    
T  14336774 aaacttatttgtgttggttgatgattgtaaggttgaagataaagggaaaaaaatataatgcagaaagattatgataaaatcaatgttcctcttgaattta 14336675  T
Q  182 atggttgagatttactttcccatga 206  Q
    ||||||||||||||||||| |||||    
T  14336674 atggttgagatttactttctcatga 14336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 7159266 - 7159382
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||| || ||    
T  7159266 ataaaggagaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaaaaagtt 7159365  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||| |||||||||    
T  7159366 tgctttcccaaattaaa 7159382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 7158552 - 7158442
Alignment:
Q  126 gggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgattt 225  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  || ||| |||| |||    
T  7158552 gggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaatgaagtttgcttt 7158453  T
Q  226 ctcaaattaaa 236  Q
    | |||||||||    
T  7158452 cccaaattaaa 7158442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 43637569 - 43637456
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  43637569 tttgtgttggttgatgattgtaaggttgaagataaaggggaaaaa-tataatgtagaaagactatgataaaatcaatgtttctcttgaatctaatggttg 43637471  T
Q  189 agatttactttccca 203  Q
    |||||||||||||||    
T  43637470 agatttactttccca 43637456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 43637980 - 43638119
Alignment:
Q  96 tggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagattta 195  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  43637980 tggttgatgattgtaaggttgaagataaagga-aaaaaatataatgtagaaagactatgataaaatcaatgttcctcttaaatctaatggttgagattta 43638078  T
Q  196 ctttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    |||||||||||||  |||||| |||  |||| |||||||||    
T  43638079 ctttcccatgatgggaaagaagtttactttcccaaattaaa 43638119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 25329882 - 25329999
Alignment:
Q  119 gataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaat 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |    
T  25329882 gataaaggggaaaaaatataatgtagagagactatgataaaatcaatgttcctcttaaatctaatggttgagatttactttcccatgatggaaaagaagt 25329981  T
Q  219 ttgatttctcaaattaaa 236  Q
    ||| |||| |||||||||    
T  25329982 ttgctttcccaaattaaa 25329999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 30847318 - 30847206
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||    
T  30847318 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttacttttccatgatggaaaagaagtt 30847219  T
Q  220 tgatttctcaaat 232  Q
    || |||| |||||    
T  30847218 tgctttcccaaat 30847206  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 42179221 - 42179105
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||| ||||||| ||    
T  42179221 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttaaatctaatggttgagatttacttttccatgatggaaaagaagtt 42179122  T
Q  220 tgatttctcaaattaaa 236  Q
    || |||| |||||||||    
T  42179121 tgctttcccaaattaaa 42179105  T

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Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 25329506 - 25329418
Alignment:
Q  120 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  25329506 ataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatg 25329418  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 42179923 - 42180033
Alignment:
Q  126 gggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgattt 225  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||  |||||| |||| |||    
T  42179923 gggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatttaatggttgagatttactttcccatgatgagaaagaagtttgcttt 42180022  T
Q  226 ctcaaattaaa 236  Q
    | |||||||||    
T  42180023 cccaaattaaa 42180033  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 30847829 - 30847894
Alignment:
Q  171 tcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||  || ||| |||| |||| |||||||||    
T  30847829 tcttgaatctaatggttgagatttactttcccatgatgggaaggaagtttgctttcccaaattaaa 30847894  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 26836492 - 26836425
Alignment:
Q  96 tggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatca 163  Q
    |||||||||||| |||| ||||||| |||||  ||||||| || |||||| |||||||| ||||||||    
T  26836492 tggttgatgattctaaggttgaagacaaaggaaaaaaaatttagtgtagagagactatggtaaaatca 26836425  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 43638126 - 43638094
Alignment:
Q  59 ggtgctatttaatttgggaaagtaaacttcttt 91  Q
    ||||| |||||||||||||||||||||||||||    
T  43638126 ggtgccatttaatttgggaaagtaaacttcttt 43638094  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 44021418 - 44021382
Alignment:
Q  150 ctatgataaaatcaatattcttcttgaatctaatggt 186  Q
    |||||||||||||||||||| |||| |||||||||||    
T  44021418 ctatgataaaatcaatattcctctttaatctaatggt 44021382  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 45811228 - 45811335
Alignment:
Q  129 aaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctc 228  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||| |||| |||| |    
T  45811228 aaaaaatataatgtagaaagactatgataaaatcaatattcctcttgaatttaatggttgagatttactttcccatgatgagaaagaagtttgttttccc 45811327  T
Q  229 aaattaaa 236  Q
    ||||||||    
T  45811328 aaattaaa 45811335  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 45810839 - 45810730
Alignment:
Q  127 ggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttc 226  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||  |||| ||| ||  ||||    
T  45810839 ggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttacttttccataataaaaaaaaaaattattttc 45810740  T
Q  227 tcaaattaaa 236  Q
    ||||||||||    
T  45810739 tcaaattaaa 45810730  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 30780878 - 30780997
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||  | |||||| ||||||||||||||||||| ||| | || ||||||| |||      
T  30780878 tttgtgttggttgatgattgtaaggttgaagacaaaggggaaaaaattcagtgtagagagactatgataaaatcaatgttcctttttaatctaacggtaa 30780977  T
Q  189 agatttactttcccatgatg 208  Q
    | ||||||||||||||||||    
T  30780978 acatttactttcccatgatg 30780997  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 194657 - 194742
Alignment:
Q  151 tatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||| |||| |||| |||||||||    
T  194657 tatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaa 194742  T

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Target: scaffold0129 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 43112 - 43231
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| || || | | ||||||| ||||||||||| ||| |||| ||| ||||||||     
T  43112 tttgtgttggttgatgattgtaaggttgaagataaaggggaataaatttagtgcaaagagactataataaaatcaatgttcctctttaatttaatggtta 43211  T
Q  189 agatttactttcccatgatg 208  Q
    ||||||||||||||||||||    
T  43212 agatttactttcccatgatg 43231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 30513794 - 30513679
Alignment:
Q  89 tttgtgttggttgatgattgtaagattgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatattcttcttgaatctaatggttg 188  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| || |||||| ||| ||||||||||||||| ||| |||| ||| ||||||||     
T  30513794 tttgtgttggttgatgattgtaaggttgaagataaaggggaataaatttagtgtagagagattatgataaaatcaatgttcctctttaatttaatggtta 30513695  T
Q  189 agatttactttcccat 204  Q
    ||||||||||| ||||    
T  30513694 agatttacttttccat 30513679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 41195322 - 41195407
Alignment:
Q  151 tatgataaaatcaatattcttcttgaatctaatggttgagatttactttcccatgatgcaaaagaaatttgatttctcaaattaaa 236  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||  |||||| |||| |||| |||||||||    
T  41195322 tatgataaaatcaatgttcctcttgaatctaatggttgagatttacttttccatgatgggaaagaagtttgctttcccaaattaaa 41195407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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