View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_371 (Length: 239)
Name: NF10829A_low_371
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_371 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 20816518 - 20816291
Alignment:
| Q |
9 |
ccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaa |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816518 |
ccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaa |
20816419 |
T |
|
| Q |
109 |
ctggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccccgaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816418 |
ctggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccccgaat |
20816319 |
T |
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| Q |
209 |
tgaaacttcattggatatttttcgacat |
236 |
Q |
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|| |||||||||||||||||| |||||| |
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| T |
20816318 |
tgcaacttcattggatattttgcgacat |
20816291 |
T |
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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 38779627 - 38779821
Alignment:
| Q |
9 |
ccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaa |
108 |
Q |
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||||| |||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |
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| T |
38779627 |
ccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaa |
38779726 |
T |
|
| Q |
109 |
ctggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
203 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| ||||||| |
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| T |
38779727 |
ctggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtccccc |
38779821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 33388586 - 33388771
Alignment:
| Q |
9 |
ccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaa |
108 |
Q |
| |
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|||||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||| |
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| T |
33388586 |
ccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaa |
33388685 |
T |
|
| Q |
109 |
ctggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
194 |
Q |
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||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388686 |
ctggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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