View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10829A_low_376 (Length: 239)
Name: NF10829A_low_376
Description: NF10829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10829A_low_376 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 14680555 - 14680771
Alignment:
| Q |
11 |
tcagttccctacatcttctctttatagagcaggaaaatcacattctcaggctaagctgccaagaaatctaccaaagcattaatcctatcatttttattga |
110 |
Q |
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| T |
14680555 |
tcagttccctacatcttctctttatagagcaggaaaatcacat-ctcaggctaagctgccaagaaatctaccaaagcattaatcctatcatttgtattga |
14680653 |
T |
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| Q |
111 |
attcaatatttgtaagactaaatcccaaattagtccctaacaattgtatatgggcgacacattagcccctcaattaaacttcccttaaatttcacttatt |
210 |
Q |
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| T |
14680654 |
attcaatatttgtatgactaaatcccaaattagtccctaacaattgtatatgggcgacacattagcccctcaattaaac-----------ttcacttatt |
14680742 |
T |
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| Q |
211 |
agttgttgacaattttacttatctgttaa |
239 |
Q |
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| T |
14680743 |
agttggtgacaattttacttatctgttaa |
14680771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 14683315 - 14683177
Alignment:
| Q |
12 |
cagttccctacatcttctctttatagagcaggaaaatcacattctcaggctaagctgccaagaaatctaccaaagcat------taatcctatcattttt |
105 |
Q |
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| T |
14683315 |
cagttccctacaccttgtctttatacagcaggaaaatcacattctcaggctaaactacctagaaatctaccaaatcattaaccctaatcctatcatctgt |
14683216 |
T |
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| Q |
106 |
attgaattcaatatttgtaagactaaat-cccaaattag |
143 |
Q |
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| T |
14683215 |
attgaattcaatatttatacgactaagtacccaaattag |
14683177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 41688360 - 41688296
Alignment:
| Q |
51 |
cattctcaggctaagctgccaagaaatctaccaaagcattaatcctatcatttttattgaattca |
115 |
Q |
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| T |
41688360 |
cattcccaggccaagctacttagagatctaccaaagcattaatccaatcacttgtattgaattca |
41688296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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